PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P19580_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 558aa    MW: 59642.4 Da    PI: 6.713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P19580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-29220275359
                            -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            D ynWrKYGqK+vk+se++rsYYrCt ++C++kkkver+  d++++e++Y+g+Hnh+
  GSMUA_Achr9P19580_001 220 DVYNWRKYGQKQVKSSENARSYYRCTDSNCSAKKKVERCP-DGTIIEVIYRGKHNHD 275
                            9***************************************.***************7 PP

2WRKY103.21.4e-32391448259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             Dgy+WrKYGqK vkg+++prsYYrCt++gCpv+k+ver  +d k++ itYegeHnhe
  GSMUA_Achr9P19580_001 391 TDGYRWRKYGQKFVKGNRNPRSYYRCTHSGCPVRKHVERVPHDAKALLITYEGEHNHE 448
                            7********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-26216277IPR003657WRKY domain
SuperFamilySSF1182901.44E-22217277IPR003657WRKY domain
SMARTSM007741.2E-29218276IPR003657WRKY domain
PfamPF031062.0E-22220275IPR003657WRKY domain
PROSITE profilePS5081121.609220277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-32378450IPR003657WRKY domain
SuperFamilySSF1182906.28E-28383450IPR003657WRKY domain
PROSITE profilePS5081132.019385450IPR003657WRKY domain
SMARTSM007741.6E-37390449IPR003657WRKY domain
PfamPF031067.0E-26392448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MTEEKASSSD EGAGRASVDL GVPVAEEKAT SDGGDLGRTA VDLEASMSDE KASSAGEKAG  60
REAGGTSTLP SSDAEEHLPA DRGAGPAAAA EGGAPDAAPP TPNTGGRSFS QLLAGAMASP  120
TGSPHPAPIV TVPVVAVPCF LTPAALIESQ GFAGQFAMTH QAVLATVTAQ AQMQLQAVCS  180
SSSPKPIADS FPQPMLSTAS PIPLQQMPPP TPELNKTSGD VYNWRKYGQK QVKSSENARS  240
YYRCTDSNCS AKKKVERCPD GTIIEVIYRG KHNHDPPHKH RYTKDRGSQS GGPPLENDGL  300
EHPSIGHKES DPSSCKTEQK SSNETPKQQL YCSSDCLLDV GTKSEEDIVD EPDPKRRQVI  360
KVFYFNFLFS PVLKTIREYI VQTEIDARHL TDGYRWRKYG QKFVKGNRNP RSYYRCTHSG  420
CPVRKHVERV PHDAKALLIT YEGEHNHEQP SSKYASETLS TTAKSNIAAG VASEQLGISG  480
VQSVKKLSDK SHPNNVLKKV VSDPELELGG DRALESAQTL LSIGCSPTSA EGTAASNSEC  540
MKSPIFKENP AVVSVQNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24381451878Probable WRKY transcription factor 4
2lex_A1e-24381451878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686675.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
TrEMBLM0U1R50.0M0U1R5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P19580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-56WRKY DNA-binding protein 32