PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P19580_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 558aa MW: 59642.4 Da PI: 6.713 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.4 | 1.6e-29 | 220 | 275 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 D ynWrKYGqK+vk+se++rsYYrCt ++C++kkkver+ d++++e++Y+g+Hnh+ GSMUA_Achr9P19580_001 220 DVYNWRKYGQKQVKSSENARSYYRCTDSNCSAKKKVERCP-DGTIIEVIYRGKHNHD 275 9***************************************.***************7 PP | |||||||
2 | WRKY | 103.2 | 1.4e-32 | 391 | 448 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK vkg+++prsYYrCt++gCpv+k+ver +d k++ itYegeHnhe GSMUA_Achr9P19580_001 391 TDGYRWRKYGQKFVKGNRNPRSYYRCTHSGCPVRKHVERVPHDAKALLITYEGEHNHE 448 7********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-26 | 216 | 277 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-22 | 217 | 277 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-29 | 218 | 276 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-22 | 220 | 275 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.609 | 220 | 277 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-32 | 378 | 450 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-28 | 383 | 450 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.019 | 385 | 450 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 390 | 449 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-26 | 392 | 448 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MTEEKASSSD EGAGRASVDL GVPVAEEKAT SDGGDLGRTA VDLEASMSDE KASSAGEKAG 60 REAGGTSTLP SSDAEEHLPA DRGAGPAAAA EGGAPDAAPP TPNTGGRSFS QLLAGAMASP 120 TGSPHPAPIV TVPVVAVPCF LTPAALIESQ GFAGQFAMTH QAVLATVTAQ AQMQLQAVCS 180 SSSPKPIADS FPQPMLSTAS PIPLQQMPPP TPELNKTSGD VYNWRKYGQK QVKSSENARS 240 YYRCTDSNCS AKKKVERCPD GTIIEVIYRG KHNHDPPHKH RYTKDRGSQS GGPPLENDGL 300 EHPSIGHKES DPSSCKTEQK SSNETPKQQL YCSSDCLLDV GTKSEEDIVD EPDPKRRQVI 360 KVFYFNFLFS PVLKTIREYI VQTEIDARHL TDGYRWRKYG QKFVKGNRNP RSYYRCTHSG 420 CPVRKHVERV PHDAKALLIT YEGEHNHEQP SSKYASETLS TTAKSNIAAG VASEQLGISG 480 VQSVKKLSDK SHPNNVLKKV VSDPELELGG DRALESAQTL LSIGCSPTSA EGTAASNSEC 540 MKSPIFKENP AVVSVQNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-24 | 381 | 451 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-24 | 381 | 451 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018686675.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 isoform X1 | ||||
TrEMBL | M0U1R5 | 0.0 | M0U1R5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P19580_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5820 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-56 | WRKY DNA-binding protein 32 |