PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P19520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 326aa MW: 36160.4 Da PI: 9.7325

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P19520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174	4.5e-54	17	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+ GSMUA_Achr9P19520_001 17 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIITEVDLYKFDPWELPGKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGT 103 79**************************.88***********888899****************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+vl++ ++ +vg+kk Lvfy+gr p+g kt+W+mheyrl GSMUA_Achr9P19520_001 104 DKPVLTSggNQVKVGVKKALVFYRGRPPRGIKTNWIMHEYRL 145 **9666667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-64	12	181	IPR003441	NAC domain
PROSITE profile	PS51005	62.213	17	180	IPR003441	NAC domain
Pfam	PF02365	3.8E-28	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MKHQPQQQQQ PPPQPHLPPG FRFHPTDEEL VVHYLKKKAA SAPLPVAIIT EVDLYKFDPW 60 ELPGKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVLTS GGNQVKVGVK 120 KALVFYRGRP PRGIKTNWIM HEYRLADASS RPPHGGHMAN KKRGGSLRLD DWVLCRIYKK 180 NNTQQTAATG GQPDSGPLPQ RPPTNYNALL ENDETFFEGL LANEVGLPNP LASAYWIDST 240 DIAAPSAKRF HTGDGNSSSS AANKNNTSSY SNGSATNDDG GHENQMILNQ MPHGATFHDQ 300 MMLRQLRDGG AIFQQPYQLP GVNWSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-76	3	185	3	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-76	3	185	3	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-76	3	185	3	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-76	3	185	3	170	NO APICAL MERISTEM PROTEIN
4dul_A	2e-76	3	185	3	170	NAC domain-containing protein 19
4dul_B	2e-76	3	185	3	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418167.1	0.0	PREDICTED: NAC transcription factor NAM-B2-like
Swissprot	A0SPJ6	1e-101	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	M0U1Q9	0.0	M0U1Q9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P19520_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-93	NAC domain containing protein 2

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]