PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P19380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 307aa    MW: 35632.8 Da    PI: 10.5698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P19380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-16453148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                           r+rW +eEdell ++vkq+G++ W  ++++mg  ++R +k+c +rw +yl
  GSMUA_Achr9P19380_001  4 RQRWQPEEDELLREYVKQYGPKEWGMVSERMGrpLHRDPKSCHERWKNYL 53
                           89**********************************************97 PP
2Myb_DNA-binding35.42.5e-1159103147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
  GSMUA_Achr9P19380_001  59 KGSLTPEEQSLVISLQARYGNK-WKAIAAHLP-GRTPKRLGKWWEVF 103
                            6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.017157IPR017930Myb domain
SMARTSM007176.1E-14355IPR001005SANT/Myb domain
SuperFamilySSF466891.91E-22499IPR009057Homeodomain-like
CDDcd001675.09E-9653No hitNo description
Gene3DG3DSA:1.10.10.605.0E-20660IPR009057Homeodomain-like
PfamPF139211.4E-14769No hitNo description
PROSITE profilePS5129417.01758108IPR017930Myb domain
SMARTSM007178.8E-1058106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-1661107IPR009057Homeodomain-like
CDDcd001676.54E-663104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRERQRWQPE EDELLREYVK QYGPKEWGMV SERMGRPLHR DPKSCHERWK NYLRPGLKKG  60
SLTPEEQSLV ISLQARYGNK WKAIAAHLPG RTPKRLGKWW EVFKEKQLKL ANQSGAGSGR  120
HPAYEHILQT FAEKHALLRE PPLPIDHCSS PSPSSVLSSA TAAAPSVTLS LSPPRSPALA  180
AHRVPIVVQM CQEVEEGRRA WVQHRKEAAW RLSRLEQQME TEKARKKTEK VEEVEGKIRR  240
LRDEERSRLE RVEREWREKV TQLRTEAEAE EAKMAEAWAR KQAKLATLIR RIAGDSARFF  300
SFSCNVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-1611101996MYB3
3zqc_D4e-1611101996MYB3
3zqc_G4e-1611101996MYB3
3zqc_J4e-1611101996MYB3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744743e-61DQ074474.1 Malus x domestica MYB92 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418157.10.0PREDICTED: protein rough sheath 2 homolog
SwissprotQ94IB13e-91RS2_ORYSJ; Protein rough sheath 2 homolog
TrEMBLM0U1P50.0M0U1P5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P19380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.15e-55MYB family protein