PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P19330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 248aa    MW: 27540 Da    PI: 5.8787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P19330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-1894144256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            ++kGVr+++ +g+W+AeIrdp    +r +r +lg+f taeeAa+a+ aa+ +le e
  GSMUA_Achr9P19330_001  94 RHKGVRQRR-WGKWAAEIRDP----IRrARLWLGTFATAEEAAAAYRAAASRLEEE 144
                            58****998.**********7....246************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-1994155IPR001471AP2/ERF domain
PROSITE profilePS5103219.53394151IPR001471AP2/ERF domain
CDDcd000183.76E-1394124No hitNo description
PfamPF008477.5E-1294144IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1695144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-2195148IPR001471AP2/ERF domain
PRINTSPR003672.2E-995106IPR001471AP2/ERF domain
PRINTSPR003672.2E-9117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MMRRKMSSGK LERSSAARST PVQRIRVFFT DPDATDSDDG DEAVMKQCKR VVREIHVDRI  60
AKTLKTPADP ENERRQKKKE AARVAVPSPA ITGRHKGVRQ RRWGKWAAEI RDPIRRARLW  120
LGTFATAEEA AAAYRAAASR LEEEKRRLQH SGPAEGSAYS FVSVPSPSSV LTPPAATAEE  180
KAERTIAELF GERRVEVPAE MDFDALDGEA PFLLGELGDD LIGFDDGFDD LPLWGQTLDG  240
GDFSFLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1193141353ATERF1
3gcc_A1e-1193141353ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418134.11e-178PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLM0U1P01e-177M0U1P0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P19330_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-15cytokinin response factor 2