PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P18030_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 162aa MW: 18082.8 Da PI: 7.3022

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P18030_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.9	2.1e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+ slvyeA ar+rdPvyG+vg i+ lq+q++ GSMUA_Achr9P18030_001 6 PCASCKLLRRRCTKDCIFAPYFPSDDPHKFAIVHKIFGASNVSKMLQELPVHQRADAVGSLVYEATARMRDPVYGCVGAISYLQNQVS 93 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 ql+ +la++++e GSMUA_Achr9P18030_001 94 QLQMQLAVAQTE 105 *****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.7	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCTKD CIFAPYFPSD DPHKFAIVHK IFGASNVSKM LQELPVHQRA 60 DAVGSLVYEA TARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQTEILCIQ MQQEPPLAEQ 120 KMEADDKSFV INNNLTAMPQ LLNYASSSNV AQDPLKREFL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417985.1	1e-120	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	7e-76	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A444EI83	1e-118	A0A444EI83_ENSVE; Uncharacterized protein
TrEMBL	M0U1B0	1e-118	M0U1B0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P18030_001	1e-119	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-78	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]