PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P17050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 279aa    MW: 30833.9 Da    PI: 8.396
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P17050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
  GSMUA_Achr9P17050_001 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPSNTGLMRCSKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding46.87e-1567112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+ E+ +++++  +lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_Achr9P17050_001  67 RGNFTPHEEGIIIHLQSLLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.048965IPR017930Myb domain
SuperFamilySSF466898.44E-3111108IPR009057Homeodomain-like
SMARTSM007178.9E-141363IPR001005SANT/Myb domain
PfamPF002493.5E-161461IPR001005SANT/Myb domain
CDDcd001674.23E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2465117IPR009057Homeodomain-like
SMARTSM007174.0E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.22866116IPR017930Myb domain
PfamPF002494.1E-1367112IPR001005SANT/Myb domain
CDDcd001671.63E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PSNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGIIIH LQSLLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKIKKKQ  120
DITVLTFPLP SMRLTPPIYA CSTGNISRLL EGWTRSSKKN TQGKLQERAI ADDSHSSNND  180
ATAAASVREK SRAAGDQGCS TAMTHEDLGT LLSFEKVSGG SWEKTAAGKA SFGDAEATQG  240
GENHQPPLSL LEKWLFDEAS GQVDELMDLP VDCCSLSMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417866.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV71e-105MYB60_VITVI; Transcription factor MYB60
TrEMBLM0U1120.0M0U112_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P17050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.16e-95myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]