PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P17000_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 33951.9 Da PI: 6.987 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 87 | 132 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+ ++ gR++k+c++rw++ GSMUA_Achr9P17000_001 87 RGHWRPAEDAKLKELVSQYGPQNWNLIAENLQ-GRSGKSCRLRWFNQ 132 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.3e-16 | 139 | 182 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a +++G++ W++Iar ++ gRt++ +k++w+ GSMUA_Achr9P17000_001 139 RRAFSEEEEERLLAARRLYGNK-WALIARLFP-GRTDNGVKNHWHV 182 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.321 | 82 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 86 | 135 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.17E-27 | 87 | 180 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-16 | 87 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 88 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.80E-13 | 90 | 131 | No hit | No description |
PROSITE profile | PS51294 | 19.457 | 138 | 188 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 138 | 186 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-13 | 139 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 141 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.49E-4 | 157 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MALNQLKPTA DKGFFPPPPP PPPFLKALSS PSGERECMSV EQGWRLQGLK SWQEHHKGEE 60 TNDHGEEDEG GSGATDESVE QHKLCARGHW RPAEDAKLKE LVSQYGPQNW NLIAENLQGR 120 SGKSCRLRWF NQLDPRINRR AFSEEEEERL LAARRLYGNK WALIARLFPG RTDNGVKNHW 180 HVIMARTKRE QSNDESASTC TTELSLNSFT TMVAANSLNR HSPPHRAHLH DPVIGTFPHA 240 SGFLCCGAPI RWIPGFNQSA CSANPENSAN GPVDYHMTSA WLDGDVREKI GLPFIDFLGV 300 GTTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 85 | 186 | 5 | 106 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417859.1 | 0.0 | PREDICTED: transcriptional activator Myb-like isoform X1 | ||||
TrEMBL | M0U107 | 0.0 | M0U107_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P17000_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-57 | myb domain protein 105 |