PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P17000_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 304aa    MW: 33951.9 Da    PI: 6.987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P17000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-1787132147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W + Ed +l+++v q+G+ +W++Ia+ ++ gR++k+c++rw++ 
  GSMUA_Achr9P17000_001  87 RGHWRPAEDAKLKELVSQYGPQNWNLIAENLQ-GRSGKSCRLRWFNQ 132
                            899*****************************.***********996 PP

2Myb_DNA-binding50.64.3e-16139182146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++++eE+e+l+ a +++G++ W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr9P17000_001 139 RRAFSEEEEERLLAARRLYGNK-WALIARLFP-GRTDNGVKNHWHV 182
                            678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.32182137IPR017930Myb domain
SMARTSM007171.8E-1486135IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-2787180IPR009057Homeodomain-like
PfamPF002492.0E-1687132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2688140IPR009057Homeodomain-like
CDDcd001674.80E-1390131No hitNo description
PROSITE profilePS5129419.457138188IPR017930Myb domain
SMARTSM007172.7E-13138186IPR001005SANT/Myb domain
PfamPF002492.7E-13139181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-18141186IPR009057Homeodomain-like
CDDcd001674.49E-4157181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALNQLKPTA DKGFFPPPPP PPPFLKALSS PSGERECMSV EQGWRLQGLK SWQEHHKGEE  60
TNDHGEEDEG GSGATDESVE QHKLCARGHW RPAEDAKLKE LVSQYGPQNW NLIAENLQGR  120
SGKSCRLRWF NQLDPRINRR AFSEEEEERL LAARRLYGNK WALIARLFPG RTDNGVKNHW  180
HVIMARTKRE QSNDESASTC TTELSLNSFT TMVAANSLNR HSPPHRAHLH DPVIGTFPHA  240
SGFLCCGAPI RWIPGFNQSA CSANPENSAN GPVDYHMTSA WLDGDVREKI GLPFIDFLGV  300
GTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30851865106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417859.10.0PREDICTED: transcriptional activator Myb-like isoform X1
TrEMBLM0U1070.0M0U107_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P17000_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.18e-57myb domain protein 105