PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P16920_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 306aa    MW: 34674.2 Da    PI: 7.3727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P16920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.3e-5431301129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++y ++k+ ++++ + +++ evd++k+ePwdLp+k+k + ke+yfF++rd+ky+tg r+nrat++gyWkatgk
  GSMUA_Achr9P16920_001   3 LPPGFRFHPTDEEIITHYVTPKIINHSFAA-RAMGEVDLNKCEPWDLPSKAKMGGKELYFFCQRDRKYPTGLRTNRATEAGYWKATGK 89 
                            79*************************999.89***************999999********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke++  kg lvg+kktLvfykgrap+gekt+Wvmhe+rle
  GSMUA_Achr9P16920_001  90 DKEIYWGKGVLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLE 130
                            **************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-622155IPR003441NAC domain
PROSITE profilePS5100557.1543154IPR003441NAC domain
PfamPF023651.7E-274129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MELPPGFRFH PTDEEIITHY VTPKIINHSF AARAMGEVDL NKCEPWDLPS KAKMGGKELY  60
FFCQRDRKYP TGLRTNRATE AGYWKATGKD KEIYWGKGVL VGMKKTLVFY KGRAPRGEKT  120
NWVMHEFRLE GTYPLPNLPK SAKDEWVVCR VFHKNNALKK SPINSFEDDP SPLPLMDPPY  180
PPSTSFINDD RIFDLKAIPP GFSAMMNHQL GSNPPHDSVL YYSQVPPQAY LHHVDEAMLR  240
ELAATNEGSP SAMTKHCKVE QNSNQSMGCP SQDTGLSTDH NTAISSFASK HWDRDGFDDP  300
WASYGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-51116015171NO APICAL MERISTEM PROTEIN
1ut4_B9e-51116015171NO APICAL MERISTEM PROTEIN
1ut7_A9e-51116015171NO APICAL MERISTEM PROTEIN
1ut7_B9e-51116015171NO APICAL MERISTEM PROTEIN
3swm_A1e-50116018174NAC domain-containing protein 19
3swm_B1e-50116018174NAC domain-containing protein 19
3swm_C1e-50116018174NAC domain-containing protein 19
3swm_D1e-50116018174NAC domain-containing protein 19
3swp_A1e-50116018174NAC domain-containing protein 19
3swp_B1e-50116018174NAC domain-containing protein 19
3swp_C1e-50116018174NAC domain-containing protein 19
3swp_D1e-50116018174NAC domain-containing protein 19
4dul_A9e-51116015171NAC domain-containing protein 19
4dul_B9e-51116015171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417856.10.0PREDICTED: NAC domain-containing protein 92
SwissprotQ9FK443e-95NAC87_ARATH; NAC domain-containing protein 87
TrEMBLM0U0Z90.0M0U0Z9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P16920_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-98Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]