PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P16920_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 34674.2 Da PI: 7.3727 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.9 | 9.3e-54 | 3 | 130 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++y ++k+ ++++ + +++ evd++k+ePwdLp+k+k + ke+yfF++rd+ky+tg r+nrat++gyWkatgk GSMUA_Achr9P16920_001 3 LPPGFRFHPTDEEIITHYVTPKIINHSFAA-RAMGEVDLNKCEPWDLPSKAKMGGKELYFFCQRDRKYPTGLRTNRATEAGYWKATGK 89 79*************************999.89***************999999********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke++ kg lvg+kktLvfykgrap+gekt+Wvmhe+rle GSMUA_Achr9P16920_001 90 DKEIYWGKGVLVGMKKTLVFYKGRAPRGEKTNWVMHEFRLE 130 **************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-62 | 2 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.154 | 3 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-27 | 4 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MELPPGFRFH PTDEEIITHY VTPKIINHSF AARAMGEVDL NKCEPWDLPS KAKMGGKELY 60 FFCQRDRKYP TGLRTNRATE AGYWKATGKD KEIYWGKGVL VGMKKTLVFY KGRAPRGEKT 120 NWVMHEFRLE GTYPLPNLPK SAKDEWVVCR VFHKNNALKK SPINSFEDDP SPLPLMDPPY 180 PPSTSFINDD RIFDLKAIPP GFSAMMNHQL GSNPPHDSVL YYSQVPPQAY LHHVDEAMLR 240 ELAATNEGSP SAMTKHCKVE QNSNQSMGCP SQDTGLSTDH NTAISSFASK HWDRDGFDDP 300 WASYGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-51 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 1 | 160 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 1 | 160 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 1 | 160 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 1 | 160 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417856.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Swissprot | Q9FK44 | 3e-95 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | M0U0Z9 | 0.0 | M0U0Z9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P16920_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 3e-98 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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