PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P16040_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29254.5 Da PI: 4.9102 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l d+++ +G g W+ ++ g++R++k+c++rw++yl GSMUA_Achr9P16040_001 14 RGAWSAREDQILTDYITIHGEGKWRDLPESAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+ l+v+++++lG++ W++Ia +++ gRt++++k++w++yl GSMUA_Achr9P16040_001 67 RGNITEDEENLIVRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112 7999******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.719 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.03E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.94E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.018 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.63E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRRPCCSKE GLNRGAWSAR EDQILTDYIT IHGEGKWRDL PESAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TEDEENLIVR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT YLGKKTSPQL 120 CIRGSSRRKE NKKGESSVEE VYLPSLREEL LPTDNYHSYE LTHHNESPSS LVLRDAGPVD 180 FLADFDMDEL MSSFEDDGLL QRCIDEAHDD GNFNSLWFCD AMQQDAREGT GCPESHAAFE 240 LESLASPMDS AEGEQKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417697.1 | 0.0 | PREDICTED: transcription factor TT2 isoform X1 | ||||
TrEMBL | M0U0R1 | 0.0 | M0U0R1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P16040_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 8e-62 | myb domain protein 3 |