PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15750_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 211aa    MW: 24974.2 Da    PI: 9.5784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16649347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            W + Ed++l+ +v+++G+++W++Ia++++ gR++k+c++rw++ 
  GSMUA_Achr9P15750_001  6 HWMPAEDDKLKVLVTKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                           699***************************.***********996 PP

2Myb_DNA-binding569.4e-185699146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           r+++T++Ed+ll+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  GSMUA_Achr9P15750_001 56 RKPFTKDEDQLLLAAHEIYGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                           789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.38150IPR017930Myb domain
SMARTSM007174.5E-12352IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-29497IPR009057Homeodomain-like
PfamPF002492.2E-15549IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-25657IPR009057Homeodomain-like
CDDcd001679.75E-12748No hitNo description
PROSITE profilePS5129425.76351105IPR017930Myb domain
SMARTSM007174.0E-1655103IPR001005SANT/Myb domain
PfamPF002495.4E-155698IPR001005SANT/Myb domain
CDDcd001672.79E-125898No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2158103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNTKCHWMPA EDDKLKVLVT KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRKPFT  60
KDEDQLLLAA HEIYGNRWAI IARLFPGRTD NAVKNHWHVI MVRRHKQRSQ LPRKRGDQST  120
FVEEEESKSS KKRKLEPRNT LLMTFFYVSL NSISIDGKDN SLKFYDFLQV NSDSDSTPED  180
VRREGEERYE DKEEENKSHA RFIDFLEVGS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-3211041104C-Myb DNA-Binding Domain
1msf_C2e-3211041104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112133RKRGDQSTFVEEEESKSSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers. {ECO:0000269|PubMed:18952777}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673631.11e-127PREDICTED: myb-related protein B-like
SwissprotQ9FX361e-68MYB54_ARATH; Transcription factor MYB54
TrEMBLM0U0N21e-157M0U0N2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15750_0011e-158(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-65myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]