PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P15750_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 24974.2 Da PI: 9.5784 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 6 | 49 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W + Ed++l+ +v+++G+++W++Ia++++ gR++k+c++rw++ GSMUA_Achr9P15750_001 6 HWMPAEDDKLKVLVTKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 699***************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.4e-18 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T++Ed+ll+ a++ +G++ W+ Iar ++ gRt++ +k++w+ GSMUA_Achr9P15750_001 56 RKPFTKDEDQLLLAAHEIYGNR-WAIIARLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.38 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-12 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.08E-29 | 4 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-15 | 5 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 6 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.75E-12 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 25.763 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 56 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-12 | 58 | 98 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-21 | 58 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MNTKCHWMPA EDDKLKVLVT KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRKPFT 60 KDEDQLLLAA HEIYGNRWAI IARLFPGRTD NAVKNHWHVI MVRRHKQRSQ LPRKRGDQST 120 FVEEEESKSS KKRKLEPRNT LLMTFFYVSL NSISIDGKDN SLKFYDFLQV NSDSDSTPED 180 VRREGEERYE DKEEENKSHA RFIDFLEVGS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-32 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-32 | 1 | 104 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 133 | RKRGDQSTFVEEEESKSSKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers. {ECO:0000269|PubMed:18952777}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018673631.1 | 1e-127 | PREDICTED: myb-related protein B-like | ||||
Swissprot | Q9FX36 | 1e-68 | MYB54_ARATH; Transcription factor MYB54 | ||||
TrEMBL | M0U0N2 | 1e-157 | M0U0N2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P15750_001 | 1e-158 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-65 | myb domain protein 52 |
Publications ? help Back to Top | |||
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