PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HD-ZIP
Protein Properties Length: 312aa    MW: 34043.3 Da    PI: 6.1863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.9e-18145199256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  GSMUA_Achr9P15710_001 145 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 199
                            788899***********************************************98 PP
2HD-ZIP_I/II127.36.6e-41145235192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr
  GSMUA_Achr9P15710_001 145 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCQTLTEENRRLQKEVAELR 232
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eelk 92 
                             +lk
  GSMUA_Achr9P15710_001 233 -ALK 235
                            .555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-17124202IPR009057Homeodomain-like
PROSITE profilePS5007116.763141201IPR001356Homeobox domain
SMARTSM003897.7E-15143205IPR001356Homeobox domain
SuperFamilySSF466897.27E-18145210IPR009057Homeodomain-like
PfamPF000463.0E-15145199IPR001356Homeobox domain
CDDcd000867.95E-15145202No hitNo description
PROSITE patternPS000270176199IPR017970Homeobox, conserved site
SMARTSM003405.9E-26201244IPR003106Leucine zipper, homeobox-associated
PfamPF021838.3E-11201235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MELGLRLGEA PAGRPFWSAE KAVTTKGGRG LGLMLGMGLR VGGGEEEQDE DGRVEEVAAA  60
EEEGKDEGEE RGSSEPPLQL NLLPLLPVPP QTSPQLRFPW ATEISKGSVI KGFDVNRAPS  120
TEEAEEGTAA AAASVSDEEE NGLARKKLRL SKEQSAFLEE SFKEHNTLNP KQKLALAKQL  180
NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCQTLTEE NRRLQKEVAE LRALKTSHPF  240
YMHLPATTLS MCPSCERVAT TTNSNSAAAT DTAPAAADHR PNSFAALFSK PRSFSPGSQA  300
PPAAPRQPSP VS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193201RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417663.11e-152PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE23e-92HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLM0U0M80.0M0U0M8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-59homeobox from Arabidopsis thaliana