PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P15620_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 445aa MW: 48439.1 Da PI: 6.557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P15620_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp C+++F++ + H+ ++ GSMUA_Achr9P15620_001 100 FACPVCTRPFPTEADVSAHLDVC 122 78*****************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	1.2E-7	24	52	No hit	No description
SuperFamily	SSF143503	3.27E-16	155	232	IPR018997	PUB domain
CDD	cd09212	6.56E-20	155	238	No hit	No description
Pfam	PF09409	4.2E-15	156	230	IPR018997	PUB domain
SMART	SM00580	4.0E-15	156	222	IPR018997	PUB domain
SuperFamily	SSF54236	1.45E-11	306	410	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.2E-7	315	408	No hit	No description
SMART	SM00166	0.0018	324	412	IPR001012	UBX domain
PROSITE profile	PS50033	9.722	327	410	IPR001012	UBX domain
Pfam	PF00789	4.6E-5	328	406	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MDDMKDKMKG LLKKVNNPFS STSSSKFKGQ GHVLGSGTPP SSSSSSSSLS HPRPSNPPPR 60 SPPSRRTPSP SSSSADFDPF DPLISSGRQV ENGPSVPAPF ACPVCTRPFP TEADVSAHLD 120 VCLAHDASAA PDPAMADSSD VAARVSAFVS SGPPQGAVEV VLKLLGNVAR EPQNEKFRRI 180 RMGNPKIKEA VGARGGVELL ESVGFRLAEE EGEVWATMEA PSEEQIAVIK EATTLLESWK 240 SEGSVPVVVS DVKTQRSIEP KKIDRQVKVF FPVPESEAAR IDLPDSFYNL SSTELKREAD 300 LRKKRLADSQ LLIPKSYREK QAMAAKRKYK RAVVRVQFPD GVLLQGVFLP WEPTTALYEF 360 VSSALKDPSL EFELLRPAVP KLRVVPFTKP GARATTLEEE DLVPSALVKF KPTETDSMVF 420 TGLTNELLEA SEPLNKNFEL NIDMS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MDDMKDKMKG LLKKVNNPFS STSSSKFKGQ GHVLGSGTPP SSSSSSSSLS HPRPSNPPPR  60
SPPSRRTPSP SSSSADFDPF DPLISSGRQV ENGPSVPAPF ACPVCTRPFP TEADVSAHLD  120
VCLAHDASAA PDPAMADSSD VAARVSAFVS SGPPQGAVEV VLKLLGNVAR EPQNEKFRRI  180
RMGNPKIKEA VGARGGVELL ESVGFRLAEE EGEVWATMEA PSEEQIAVIK EATTLLESWK  240
SEGSVPVVVS DVKTQRSIEP KKIDRQVKVF FPVPESEAAR IDLPDSFYNL SSTELKREAD  300
LRKKRLADSQ LLIPKSYREK QAMAAKRKYK RAVVRVQFPD GVLLQGVFLP WEPTTALYEF  360
VSSALKDPSL EFELLRPAVP KLRVVPFTKP GARATTLEEE DLVPSALVKF KPTETDSMVF  420
TGLTNELLEA SEPLNKNFEL NIDMS

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417657.2	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-148	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	M0U0M0	0.0	M0U0M0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P15620_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6756	3	3

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]