PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15370_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 312aa    MW: 34534.7 Da    PI: 8.0453
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.7e-35261192103
                            HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
           HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                            Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+k
  GSMUA_Achr9P15370_001  26 FLTKTYQLVDDPATDHVVSWGdDRVSTFVVWRPPEFARDILPSYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRK 104
                            9********************6667*****************************************999.........********** PP

                            XXXXXXXXXXXXXXX CS
           HSF_DNA-bind  89 gkkellekikrkkse 103
                            g+k+ll++i+r+k++
  GSMUA_Achr9P15370_001 105 GEKHLLCEIHRRKTA 119
                            ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3519111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5722116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEIECWGTAD GGDGVVEGNR PVPAPFLTKT YQLVDDPATD HVVSWGDDRV STFVVWRPPE  60
FARDILPSYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKHLL CEIHRRKTAS  120
ASSLFPLPSS PSLFPLYHHH AFDDQQLPRQ GPATATALIE ENERLRRSNA ALMSELSHMR  180
QLYNDIIYLV QNHVRPVAPS SAAAASANFL LSSAYNQRRA GLNSGSTTSS SSLTIAGSEP  240
SPPSPLHRSA KNHHPDNGES SSARPRLFGV PLDGCSISSS KRGLQADEPT SPSTKPRLVP  300
QNMDLGLNLM PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-21121184131Heat shock factor protein 1
5d5v_B4e-21121184131Heat shock factor protein 1
5d5v_D4e-21121184131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417632.10.0PREDICTED: heat stress transcription factor B-4c-like
SwissprotQ9C6353e-98HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLM0U0J50.0M0U0J5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-84heat shock transcription factor B4