PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P15140_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 24951.3 Da PI: 10.5837 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7.1e-13 | 55 | 101 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP a ++l+Ka+ L ++v+ +++L GSMUA_Achr9P15140_001 55 RSHSEAERRRRQRINGHLATLRSLLPAA-----TRLDKAALLGEVVRQVREL 101 58**************************.....9*********999988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.669 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-10 | 55 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-12 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.79E-10 | 55 | 106 | No hit | No description |
SuperFamily | SSF47459 | 6.28E-13 | 55 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-11 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.5E-4 | 142 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MPSSNALHAC YSLMIWPPRS SSSGGELVRG VGMQPVATGE MVHETRTAGE TRAVRSHSEA 60 ERRRRQRING HLATLRSLLP AATRLDKAAL LGEVVRQVRE LRVRVEEVAV MVPGEGDEVG 120 VEEEEEEGGG GGGRGRVVRA WVCCADRPGL MGELSRAVRS VRARAVRAEM VTVGGRTRSL 180 LELEVSEAAE RGEGRSALQA ALWAVLLTNR TAPAENYSKR ARTSTRFSKT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417611.2 | 1e-159 | PREDICTED: transcription factor bHLH30-like isoform X1 | ||||
TrEMBL | M0U0H2 | 1e-158 | M0U0H2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P15140_001 | 1e-159 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 7e-13 | bHLH family protein |