PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P14340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 362aa    MW: 39553.9 Da    PI: 10.0435
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P14340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-1792181186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +W++  + +Li+a  e+  +l+rg+lk+++W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k   +   s ++s++p+f++
  GSMUA_Achr9P14340_001  92 CWSEGATSTLIDAWGERFLELSRGNLKQKHWQEVADAVtSRDGYTKTPKtdvQCKNRIDTLKKKYKIEKSKISASDSSTTSSWPFFHR 179
                            7*************************************888899998865559****************999999899999******* PP

               trihelix  85 le 86 
                            l+
  GSMUA_Achr9P14340_001 180 LD 181
                            97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2690181No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEDDDDALSP SRSQSQSASR SPSTTSSPPP VSVVPPSSDP SPHVRNGRVA EPVTVAAPPY  60
HALALALSTQ QQRPSPAAVV GGGGGGGGRE DCWSEGATST LIDAWGERFL ELSRGNLKQK  120
HWQEVADAVT SRDGYTKTPK TDVQCKNRID TLKKKYKIEK SKISASDSST TSSWPFFHRL  180
DLLLGPNHKP TGALPPSSTK IPAGIPIRPP ARLTQLIPQR HRSSHPALNK ARSLPPSVSS  240
KSADSSADSS DGRTAGLREL TRAILRFGEV YERVESSKLR QAMEMEKQRM EFTRELELQR  300
LEFLMKTQME LSQLKSHHHH HHGSSSNSRK KRMDVAGGGS NHHNHHDTND NNNSIDNSDN  360
NG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417540.11e-167PREDICTED: trihelix transcription factor ASIL1-like
SwissprotQ9LJG87e-49ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM0U0920.0M0U092_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P14340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.15e-45sequence-specific DNA binding transcription factors