PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P13870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 303aa    MW: 32484.2 Da    PI: 7.5737
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P13870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.72.5e-16221257135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  GSMUA_Achr9P13870_001 221 CHHCGISSksTPMMRRGPEGPRTLCNACGLMWANKGT 257
                            *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.8E-1285120IPR010399Tify domain
PROSITE profilePS5132015.20685120IPR010399Tify domain
PfamPF062004.2E-1388119IPR010399Tify domain
PfamPF062035.8E-16146188IPR010402CCT domain
PROSITE profilePS5101713.513146188IPR010402CCT domain
SMARTSM004015.9E-13215268IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-12219269No hitNo description
Gene3DG3DSA:3.30.50.103.7E-16220262IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.23E-15220263No hitNo description
PfamPF003203.6E-14221257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221248IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.972228271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSGKPGQTAE LRTAGFVRQP GVAEGHMIAE ADARAMQTYG NDRDNNGGGD GVDEDFDGAV  60
EGEGMEGDAL PDHGGLGDPH AVVVPPVTSN QLTLSFQGEV YVFDSVSPEK VQAVLLLLGG  120
REIATNPASI VSASNPLNKR LNFPHRVASL MRFREKRKER NFDKKIRYAV RKEVALRMQR  180
NRGQFTSSKS KPEDATSSVT NCEGIQRWGS IEGRPPSAAV CHHCGISSKS TPMMRRGPEG  240
PRTLCNACGL MWANKGTLRD LSKNPSLLTH NGPSEGNEVN GASAPVAEHQ PPNTANDRDT  300
ASS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417492.10.0PREDICTED: GATA transcription factor 17-like
SwissprotQ5Z4U51e-103GAT20_ORYSJ; GATA transcription factor 20
TrEMBLM0U0450.0M0U045_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P13870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-76ZIM-like 1