PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P13760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 152aa    MW: 16833.9 Da    PI: 5.3346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P13760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-20653253
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                           +y+GVr+++ +g+Wv+eIr+p+    ++r++lg+fgtae+Aa+a+++a++ +
  GSMUA_Achr9P13760_001  6 RYRGVRQRH-WGSWVSEIRHPVL---KTRIWLGTFGTAEDAARAYDEAARLM 53
                           69******9.**********744...5*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.27E-33565No hitNo description
PROSITE profilePS5103220.745663IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-21664IPR016177DNA-binding domain
SMARTSM003802.7E-40669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-33663IPR001471AP2/ERF domain
PfamPF008471.4E-12655IPR001471AP2/ERF domain
PRINTSPR003676.2E-11718IPR001471AP2/ERF domain
PRINTSPR003676.2E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPRLQRYRGV RQRHWGSWVS EIRHPVLKTR IWLGTFGTAE DAARAYDEAA RLMCGSKART  60
NFPVDPNCSI PAPALSPGLM AKLEKCCSAS REEGKRVEVV APVGREEEAE VTRVDDEYIE  120
EMIEELIYNG SLEISTSSSS SSSSSSSSSS YL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17569469ATERF1
3gcc_A1e-17569469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417483.21e-107PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-43ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0U0341e-106M0U034_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P13760_0011e-107(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-32ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]