PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P13610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 310aa    MW: 34871.2 Da    PI: 6.9764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P13610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr9P13610_001 14 KGPWSPEEDTILKAYIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP
2Myb_DNA-binding39.11.7e-1269111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g +++eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr9P13610_001  69 GDFSEEEDFIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNHWNT 111
                            789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.272962IPR017930Myb domain
SuperFamilySSF466892.09E-2611109IPR009057Homeodomain-like
SMARTSM007174.4E-131364IPR001005SANT/Myb domain
PfamPF002492.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001676.13E-101662No hitNo description
PROSITE profilePS5129421.68763117IPR017930Myb domain
SMARTSM007175.6E-1167115IPR001005SANT/Myb domain
PfamPF002497.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2170117IPR009057Homeodomain-like
CDDcd001671.71E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDTILKAYIE EHGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSEEEDFIIC SLFISIGSRW SIIAAQLPGR TDNDIKNHWN TKLKKKLLGK  120
KREPLQHRRV HATQQPSNDK PPPAVTSSAL ERIQLHMHLQ SLHNPFSFYH NPAQWPDYHA  180
LGESNFQSHN MDDMAKAQAL GDMAAYQAKL DMRNTAIQEE MDCSTLGFRS PPDSIGAPST  240
DRSSASSNPL EPATGCKLYG SCDYNQTNVE AEIMDSWDCN GFSEDTSGLW DLTAVIHADS  300
MLQEYMKGRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0109615e-88FJ010961.1 Musa balbisiana microsatellite MbIIHR55 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417473.10.0PREDICTED: transcription factor MYB36
SwissprotQ9FKL22e-91MYB36_ARATH; Transcription factor MYB36
TrEMBLM0U0190.0M0U019_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P13610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-86myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]