PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P12390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 909aa    MW: 97819.4 Da    PI: 9.4532
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P12390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.8e-11281332348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 
                             W t+E++ll+ av+++G+++W+++a +++        +t+ +c+ r+++++
  GSMUA_Achr9P12390_001 281 VWGTWEELLLAFAVNRHGTRSWDSVAMEIQsrspfsHLLTPQSCRRRYRDLK 332
                            6***********************************88***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.4E-4278334IPR001005SANT/Myb domain
SuperFamilySSF466891.89E-5279334IPR009057Homeodomain-like
PfamPF002494.8E-10281332IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-4282330IPR009057Homeodomain-like
CDDcd001672.15E-6282332No hitNo description
PROSITE profilePS500906.04282332IPR017877Myb-like domain
SMARTSM002975.9E-4553665IPR001487Bromodomain
SuperFamilySSF473706.02E-10561661IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.2E-10568663IPR001487Bromodomain
PfamPF004392.2E-6579649IPR001487Bromodomain
CDDcd043691.94E-10587660No hitNo description
PROSITE profilePS500149.27592646IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.2E-10717728IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MKASLKFRED RQPLLRAKVP VSILGLPFLS GLAAALDDVR HLRLDLSTAF ASGPSLRLSY  60
RPNDPAAPFS LVLKTGLGPL GSPAMGAPFS MAAEFGLLAR PGSAGPSFSI LFKPRFGDFA  120
VKKTVSSTAA SAAAAANKIS IEHGPNGRDA PATEKKGSDG ELLEERSSMR RQLEALQAEN  180
GTLRRAVEEL RAEVGGWKAA SPAASGEDDS KGRSNFAAPA GKRARRGDEK APEHPAKAAP  240
EDVKKELKKA LVMGSTGGDD GGGRVLRAAT MESPGHPEGE VWGTWEELLL AFAVNRHGTR  300
SWDSVAMEIQ SRSPFSHLLT PQSCRRRYRD LKLRFAGSGG EEGRHEDDEG EEAGSSVEVP  360
WVEELRKLRV AELRRDVERY DASIGYLQLK VKRLEEERER SLRETESVEE KPDQEKEAGN  420
SASHTPEAAV GDAISGKDSG RSCGESNSTL PKEGEKKLDG DDGKAEEAVG TGGESADPVE  480
RLPAGESGES MVAESKGEEE EEGEKEGSDV QCSRSPSRRR RGRRRRLIPG GCNSREEADA  540
DADAGAAEES IIMGKRVAAE SEPLMMFLDT IRSDQQVSIL ERRLGCQETV RYHSLIRRHV  600
DLEMVRAKVD GLGQEGGSYT TAEFLRDLLL LCTNVIVFHP KDSPESIAAA RLRDKVTKEI  660
SVCVGPPTPS SRPPIEPTPS PTPDLDLTAS LPDKPTTAAP LIACRTRSST SNVSEEVEEE  720
KEETPKTEPE ESVNEEKAAL EKKVNKETNV LSRKTRGLRT NKLRSGHAGE AATSHRKSDG  780
SVASTAALEK QKRQDNSPNQ IKRSSKGTVK ETLKSPSSRG GGVGGKAAEI QRKRGRSIGG  840
KDQRTRQGTG AIRVESATKK VADTSGPAKR SVGRPPKRAA SPSTLRPGKR AKGHTEARAP  900
PGSRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417295.10.0PREDICTED: uncharacterized protein LOC103997714
TrEMBLM0TZP80.0M0TZP8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P12390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-33DNA-binding bromodomain-containing protein