PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P11590_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 8883.87 Da PI: 4.7723 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.3e-11 | 28 | 71 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E++l+++ ++ G +W++Ia +++ gRt+k++ +w GSMUA_Achr9P11590_001 28 KMDFSEDEEKLIARMYNLVGQSRWSLIAGRIP-GRTAKEIEKYWT 71 5689****************************.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.982 | 23 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-9 | 26 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-8 | 27 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-11 | 28 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.95E-10 | 31 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-14 | 31 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MADLDRSSED VSMDSKGVVS GGNSQISKMD FSEDEEKLIA RMYNLVGQSR WSLIAGRIPG 60 RTAKEIEKYW TSRYSTTSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417220.1 | 6e-49 | PREDICTED: MYB-like transcription factor ETC1 isoform X1 | ||||
TrEMBL | M0TZG8 | 6e-50 | M0TZG8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P11590_001 | 1e-50 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 4e-16 | MYB_related family protein |