PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P11530_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 362aa MW: 38509.2 Da PI: 8.645

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P11530_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.8e-39	64	124	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ GSMUA_Achr9P11530_001 64 PQAPLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRAK 124 567899****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-28	65	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-33	67	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MMGERLRITA KNSSNTTSST TTTTNTNNSS STSSNTNKAN MVRADSITSN AARVVDKPSA 60 QDHPQAPLRC PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGCRKN 120 KRAKKPGAAP TVPPNSKHPR PLLPPDPVPS LAAQISTSSH LDATAIYALQ TAASPSDMSL 180 NLPIISNGFH IPSSTSAFDL QPHLGALGLG LSSNMHRDDE YQFGELRPLL PVNPAMISLL 240 NDYPLFGSSL SSASLLVSGI KQPKQVEDYQ TLLPFDELQA SGMGDSINGM MKEVKLEGQT 300 NTMTNNNMSS CIDWQIPSEN SLDNLGPAAA MYWNAAIGGG GGGGGAGWPD GTNYGSSVAP 360 LI

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MMGERLRITA KNSSNTTSST TTTTNTNNSS STSSNTNKAN MVRADSITSN AARVVDKPSA  60
QDHPQAPLRC PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR YWTRGGTLRN VPVGGGCRKN  120
KRAKKPGAAP TVPPNSKHPR PLLPPDPVPS LAAQISTSSH LDATAIYALQ TAASPSDMSL  180
NLPIISNGFH IPSSTSAFDL QPHLGALGLG LSSNMHRDDE YQFGELRPLL PVNPAMISLL  240
NDYPLFGSSL SSASLLVSGI KQPKQVEDYQ TLLPFDELQA SGMGDSINGM MKEVKLEGQT  300
NTMTNNNMSS CIDWQIPSEN SLDNLGPAAA MYWNAAIGGG GGGGGAGWPD GTNYGSSVAP  360
LI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582403	9e-47	KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018674202.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like isoform X1
Refseq	XP_018674203.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like isoform X2
TrEMBL	M0TZG2	0.0	M0TZG2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P11530_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-35	TARGET OF MONOPTEROS 6