PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P11190_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 327aa    MW: 36876.5 Da    PI: 6.1204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P11190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-181360148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+lv++++ +G  +W+t++++ g+ R++k+c++rw +yl
  GSMUA_Achr9P11190_001 13 RGLWSPEEDEKLVKYITSHGHSCWSTVPKEAGLQRCGKSCRLRWINYL 60
                           788*******************************************97 PP

2Myb_DNA-binding49.11.3e-1566109146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg +++eE+ +++d+++ lG++ W+ Ia++++ gRt++++k+ w++
  GSMUA_Achr9P11190_001  66 RGTFSEEEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNIWNS 109
                            899*******************.*********.*********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.927860IPR017930Myb domain
SuperFamilySSF466892.12E-2810107IPR009057Homeodomain-like
SMARTSM007177.1E-131262IPR001005SANT/Myb domain
PfamPF002492.3E-151360IPR001005SANT/Myb domain
CDDcd001672.98E-111660No hitNo description
PROSITE profilePS5129425.82361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2564116IPR009057Homeodomain-like
SMARTSM007173.6E-1465113IPR001005SANT/Myb domain
PfamPF002494.0E-1466109IPR001005SANT/Myb domain
CDDcd001674.23E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVKYITS HGHSCWSTVP KEAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EEEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNIWNSC IKKKLISQGL  120
DPTTHNLFPS SRPTNGSINS DELHQLHYTR SPTTPFTISP PIRSHDRMKS PMELNPLLET  180
PPHASVVPLH ETAPVPNFQY QDDHVLMSFK DHGSHASLDF MNGSSSSSSL DHTNMSSSSF  240
HEPGFIDDCM WDDSTVEPLE ALQQAEDLVQ AQPTMCRMGV DEASEKGMVM ETSYGSATLD  300
LEMMESALLP CGEFCSGSSM EHLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5785015e-42AJ578501.1 Elaeis guineensis microsatellite DNA, clone mEgCIR0146.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417170.10.0PREDICTED: myb-related protein 330-like
TrEMBLM0TZC80.0M0TZC8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P11190_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-83myb domain protein 67