PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P11190_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 36876.5 Da PI: 6.1204 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G +W+t++++ g+ R++k+c++rw +yl GSMUA_Achr9P11190_001 13 RGLWSPEEDEKLVKYITSHGHSCWSTVPKEAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ +++d+++ lG++ W+ Ia++++ gRt++++k+ w++ GSMUA_Achr9P11190_001 66 RGTFSEEEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNIWNS 109 899*******************.*********.*********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.927 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.12E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.98E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.823 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVKYITS HGHSCWSTVP KEAGLQRCGK SCRLRWINYL 60 RPDLKRGTFS EEEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNIWNSC IKKKLISQGL 120 DPTTHNLFPS SRPTNGSINS DELHQLHYTR SPTTPFTISP PIRSHDRMKS PMELNPLLET 180 PPHASVVPLH ETAPVPNFQY QDDHVLMSFK DHGSHASLDF MNGSSSSSSL DHTNMSSSSF 240 HEPGFIDDCM WDDSTVEPLE ALQQAEDLVQ AQPTMCRMGV DEASEKGMVM ETSYGSATLD 300 LEMMESALLP CGEFCSGSSM EHLQWDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ578501 | 5e-42 | AJ578501.1 Elaeis guineensis microsatellite DNA, clone mEgCIR0146. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417170.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | M0TZC8 | 0.0 | M0TZC8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P11190_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-83 | myb domain protein 67 |