PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P10740_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 256aa MW: 28103.7 Da PI: 10.1901 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 6.9e-32 | 190 | 247 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh GSMUA_Achr9P10740_001 190 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPTMLIVTYEGEHNHA 247 9************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.0E-18 | 141 | 186 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.3E-34 | 176 | 248 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 183 | 246 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-27 | 186 | 247 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.7E-39 | 188 | 248 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-27 | 190 | 246 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEEVEKAHRA AVESCHRVLN LLSQSQDQVQ STILLAETGD AVSRFKRVVS LLSNSSGHGR 60 VRIVNKVQSS SNHNLFSDNQ LNQFGSQASS SSHHTPSAST ARSFLSSLSM DGSVASFDGK 120 SFHLIGGPAS SDPVNLHPPP KRRCVCRGED GNGKCATSGR CHCSKRRKLR VKRSIKVPAI 180 SNKLADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDPTMLIVTY 240 EGEHNHAKLL TQSAQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 181 | 246 | 7 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009417115.1 | 1e-147 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_009417116.1 | 1e-147 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_009417118.1 | 1e-147 | PREDICTED: probable WRKY transcription factor 21 | ||||
Refseq | XP_009417119.1 | 1e-147 | PREDICTED: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 8e-76 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | M0TZ83 | 0.0 | M0TZ83_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P10740_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 1e-75 | WRKY DNA-binding protein 74 |