PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P10210_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 26895.9 Da PI: 8.4758 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5.3e-52 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhP+d+elv++yL++k++g ++e +++ + +vd++k+ePwdLp+++ + +ewy Fs rd kyatg+r+nrat sgyWkatg GSMUA_Achr9P10210_001 9 LPPGFRFHPRDDELVCDYLAAKAAGGSTESSSImMVDVDLNKCEPWDLPAAACVGGNEWYLFSLRDLKYATGQRTNRATMSGYWKATG 96 79************************9888777699*************7666789******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kdk+v++ kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ GSMUA_Achr9P10210_001 97 KDKPVTR-KGLLVGMRKTLVFYQGRAPKGKKTKWVMHEFRM 136 ******9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-59 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.301 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-26 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MLSMVEAKLP PGFRFHPRDD ELVCDYLAAK AAGGSTESSS IMMVDVDLNK CEPWDLPAAA 60 CVGGNEWYLF SLRDLKYATG QRTNRATMSG YWKATGKDKP VTRKGLLVGM RKTLVFYQGR 120 APKGKKTKWV MHEFRMEGSD GAPKLPFKPD WALCRVFCNN RRISTMPSME ASHESSGSQS 180 LSALMDNCIT FGQTPFFSEG FEQVPCFSNL SPNYVSQCQD FVLTKCLAQT GGLPDHYLIR 240 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-48 | 4 | 157 | 12 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-48 | 4 | 157 | 12 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-48 | 4 | 157 | 12 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-48 | 4 | 157 | 12 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
3swm_B | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
3swm_C | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
3swm_D | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
3swp_A | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
3swp_B | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
3swp_C | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
3swp_D | 4e-48 | 4 | 157 | 15 | 166 | NAC domain-containing protein 19 |
4dul_A | 4e-48 | 4 | 157 | 12 | 163 | NAC domain-containing protein 19 |
4dul_B | 4e-48 | 4 | 157 | 12 | 163 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416748.1 | 1e-177 | PREDICTED: NAC domain-containing protein 21/22-like isoform X2 | ||||
Swissprot | Q84TE6 | 4e-84 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0TZ30 | 0.0 | M0TZ30_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P10210_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-86 | NAC domain containing protein 1 |