PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P10060_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

FAR1

Protein Properties

Length: 356aa MW: 40252.2 Da PI: 10.2553

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P10060_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.7	3.9e-23	139	225	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA +vGFsvrk ks rn + + +vCs+eg+r ++ ++ ++++t +etrtgC a+l +k dgk++v++++ +HnH+ GSMUA_Achr9P10060_001 139 EFYIRYAGTVGFSVRKGWWDKSARNV-TRSIVYVCSREGYRPTNITN--EAKKTGSETRTGCPARLAIKIIPDGKYCVIEFVADHNHQ 223 6*******************7766.9999********9988..999********************************** PP FAR1 89 la 90 l+ GSMUA_Achr9P10060_001 224 LT 225 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-20	139	225	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEKDVRPKPI SSAGLATASK ARVKDGGKTN PAANASQSQL LRALGVRVYR YTEEERRDII 60 LMYLMKRTNR AGIKRPTKQL IHPIKPKLTS WFESMCMVRD LVLKDDIAPT NYGVDLQSVL 120 SFLAKKYTDE EITEVLRHEF YIRYAGTVGF SVRKGWWDKS ARNVTRSIVY VCSREGYRPT 180 NITNEAKKTG SETRTGCPAR LAIKIIPDGK YCVIEFVADH NHQLTAPLDI QMLRSQRLLA 240 KFQTGGRQEQ PKTILTYQFS AISDAIAAAW LGTTHRLFAF MLLINVMQGS FVSAHQFGLN 300 GVQGFHRIAQ FNQESSATTL QQPFHNSSQL SRVLFTSQFN GEELQLGNMK SYASWD

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEKDVRPKPI SSAGLATASK ARVKDGGKTN PAANASQSQL LRALGVRVYR YTEEERRDII  60
LMYLMKRTNR AGIKRPTKQL IHPIKPKLTS WFESMCMVRD LVLKDDIAPT NYGVDLQSVL  120
SFLAKKYTDE EITEVLRHEF YIRYAGTVGF SVRKGWWDKS ARNVTRSIVY VCSREGYRPT  180
NITNEAKKTG SETRTGCPAR LAIKIIPDGK YCVIEFVADH NHQLTAPLDI QMLRSQRLLA  240
KFQTGGRQEQ PKTILTYQFS AISDAIAAAW LGTTHRLFAF MLLINVMQGS FVSAHQFGLN  300
GVQGFHRIAQ FNQESSATTL QQPFHNSSQL SRVLFTSQFN GEELQLGNMK SYASWD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026659800.1	4e-81	uncharacterized protein LOC113462603 isoform X1
Refseq	XP_026659801.1	4e-81	uncharacterized protein LOC113462603 isoform X1
Refseq	XP_026659802.1	3e-81	uncharacterized protein LOC113462603 isoform X2
TrEMBL	M0TZ15	0.0	M0TZ15_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P10060_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-12	FAR1-related sequence 5