PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P08790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 215aa    MW: 23162 Da    PI: 7.52
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P08790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20109158255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+WvAeIrdp     +  +r++lg+f t+e Aa+a ++a+++++g
  GSMUA_Achr9P08790_001 109 KYRGVRQRP-WGKWVAEIRDP-----HraARVWLGTFETPEAAARAFDEAALRFRG 158
                            8********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-33108167IPR001471AP2/ERF domain
SMARTSM003807.3E-36109172IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22109167IPR016177DNA-binding domain
PfamPF008471.1E-13109158IPR001471AP2/ERF domain
PROSITE profilePS5103224.803109166IPR001471AP2/ERF domain
CDDcd000181.92E-22109168No hitNo description
PRINTSPR003671.5E-11110121IPR001471AP2/ERF domain
PRINTSPR003671.5E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNRFKLANVP RDSDDELGEF VPPPAAVTRM VVMGSEVAPV RLCTEDGRAW ETSVTVAALM  60
RVVAGESADA TEVMERSLSA TPSFSFSWGG QDEANPSATG LREQVAGRKY RGVRQRPWGK  120
WVAEIRDPHR AARVWLGTFE TPEAAARAFD EAALRFRGSK AKLNFPEDAR LGPLPPVMAA  180
ASHSTSSMTS NSASSYYVSS SLASSLPSPF SPLSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22107166363ATERF1
3gcc_A1e-22107166363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417035.11e-111PREDICTED: ethylene-responsive transcription factor ERF110-like
SwissprotQ9FH541e-32EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLM0TYN81e-152M0TYN8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P08790_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]