PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P08310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 487aa    MW: 54601.9 Da    PI: 7.8329
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P08310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.7e-23124224198
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +k+a+e+        +++ s++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv++++L +gD ++F
  GSMUA_Achr9P08310_001 124 FCKTLTASDTSTHGGFSVLRKHADEClppldmT-QNPPSQELVAKDLHENEWRFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIF 210
                            99*****************************63.4445679*********************************************** PP

                            EE-SSSEE..EEEEE- CS
                     B3  83 kldgrsefelvvkvfr 98 
                               + ++ el+v+v+r
  GSMUA_Achr9P08310_001 211 L--RGENDELRVGVRR 224
                            *..3478889***997 PP
2Auxin_resp111.67.9e-37250331183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t++ F+v+Y+Pr+s+seF+++v+k+++a ++k+svGmRfkm+fe+++++e+r+sGt++gv ++++ rW++S+WrsLk
  GSMUA_Achr9P08310_001 250 ASHALATGTLFSVFYKPRTSRSEFIISVNKYLEAKNNKFSVGMRFKMRFEGDEAPEQRFSGTIIGVDTASS-RWKDSEWRSLK 331
                            689****************************************************************9666.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.5E-43113253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-40120239IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-21122224No hitNo description
SMARTSM010191.3E-22124226IPR003340B3 DNA binding domain
PfamPF023628.0E-21124224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025124226IPR003340B3 DNA binding domain
PfamPF065073.0E-34250331IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLILLFLTVG GKFLYLGPSQ DVLYPELWKA CAGPLVTLPR EGERVYYFPQ GHMEQLEAST  60
DQELDQQMPL FDLPSKILCR VVYAEPDTDE VYAHITLHPE INQGEVTSPD PPLPEPKTCN  120
VRSFCKTLTA SDTSTHGGFS VLRKHADECL PPLDMTQNPP SQELVAKDLH ENEWRFRHIF  180
RGQPRRHLLT TGWSVFVSSK RLVAGDAFIF LRGENDELRV GVRRLMRQLN SMPSSVISSH  240
SMHLGVLATA SHALATGTLF SVFYKPRTSR SEFIISVNKY LEAKNNKFSV GMRFKMRFEG  300
DEAPEQRFSG TIIGVDTASS RWKDSEWRSL KVQWDEPSSI PRPDRVSPWE LEPLLTGTPN  360
SQPVQRNKRT RPSASPTITS DITPAFGLWK SPAESTRTFS VSGLQRGTKL HTSSCPTSRF  420
LSASKPGLIE FNASNKSSAA NIPMCRPITS EHQTDSFGAD KEHSERKQET STGCWLFGIQ  480
LVESSAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01735413355Auxin response factor 1
4ldw_A0.01735413355Auxin response factor 1
4ldw_B0.01735413355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018687010.10.0PREDICTED: auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLM0TYJ00.0M0TYJ0_MUSAM; Auxin response factor
STRINGGSMUA_Achr9P08310_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]