PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr9P08300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 167aa MW: 18803.7 Da PI: 10.1037 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 165.6 | 1.3e-51 | 1 | 129 | 11 | 139 |
Whirly 11 vkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 +k+++p + +lds + ++ ++G+++l++ +a+++rkydWekkq+falsatev++l+ l++ esceffhdp++k+s eG+v+k+l++ P GSMUA_Achr9P08300_001 1 MKPILPAIRELDSRSSRVYKNGSVILTFWPAVGQRKYDWEKKQVFALSATEVGSLIGLGPTESCEFFHDPSMKSSLEGQVKKSLSISP 88 799************************************************************************************* PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 l + G+f+nlsv n+++k+ne++svP++kaef+v+r++l+ GSMUA_Achr9P08300_001 89 LGNDNGYFLNLSVVNNIQKTNERLSVPITKAEFTVIRTVLS 129 **************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08536 | 3.3E-51 | 1 | 127 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 4.1E-58 | 1 | 147 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 5.57E-57 | 1 | 165 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MKPILPAIRE LDSRSSRVYK NGSVILTFWP AVGQRKYDWE KKQVFALSAT EVGSLIGLGP 60 TESCEFFHDP SMKSSLEGQV KKSLSISPLG NDNGYFLNLS VVNNIQKTNE RLSVPITKAE 120 FTVIRTVLSY VLPHIMGWPQ AMMRAQQPTT ETKTSKSRPD PIFEWGR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 4e-60 | 2 | 144 | 27 | 169 | StWhy2 |
3n1i_A | 4e-60 | 2 | 144 | 27 | 169 | protein StWhy2 |
3n1j_A | 4e-60 | 2 | 144 | 27 | 169 | Protein StWhy2 |
3n1k_A | 4e-60 | 2 | 144 | 27 | 169 | protein StWhy2 |
3n1l_A | 4e-60 | 2 | 144 | 27 | 169 | protein StWhy2 |
3r9y_A | 4e-60 | 2 | 144 | 27 | 169 | Why2 protein |
3r9z_A | 4e-60 | 2 | 144 | 27 | 169 | Why2 protein |
3ra0_A | 4e-60 | 2 | 144 | 27 | 169 | Why2 protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ957798 | 0.0 | KJ957798.1 Musa AB Group whirly transcription factor domain-containing protein (WHY2) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018673968.1 | 1e-122 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like, partial | ||||
Swissprot | D9J034 | 4e-59 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | M0TYI9 | 1e-120 | M0TYI9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P08300_001 | 1e-121 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-60 | WHIRLY 2 |