PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P08090_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 241aa MW: 26671.3 Da PI: 7.7781 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.3 | 3.7e-33 | 68 | 123 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC CHRnFHR+e+e GSMUA_Achr9P08090_001 68 VVRYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKETEG 123 589*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-23 | 69 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.4E-30 | 69 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-30 | 70 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.137 | 71 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.04E-19 | 168 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 170 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.5E-28 | 173 | 229 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDLSGQEGEI PIPITSVYVG GHGHGSIHDS PPIHHPSNGP PPPPLSTATT EDHHHNTTNS 60 YSTKKGVVVR YRECLKNHAA SIGGNATDGC GEFMPSGEEG TLEALKCSAC SCHRNFHRKE 120 TEGEPCCDCP ACNSLIPRAT PHNMIMPLGV MQTSESDEME GVGAMMARPV VVKKRFRTKF 180 TPEQKEKMLS FAEKVGWRLQ KQEESVVQQF CQEIGVKRRV LKVWMHNNKH HLAKKNSLQL 240 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 1e-24 | 172 | 230 | 16 | 74 | ZF-HD homeobox family protein |
1wh7_A | 1e-24 | 174 | 230 | 18 | 74 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416998.1 | 1e-169 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_009416999.1 | 1e-169 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018686824.1 | 1e-169 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Refseq | XP_018686825.1 | 1e-169 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | Q9M9S0 | 3e-80 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | M0TYG8 | 1e-180 | M0TYG8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P08090_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-78 | homeobox protein 31 |