PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P07890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 624aa    MW: 66905.5 Da    PI: 6.7467
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P07890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.8e-12240297155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  GSMUA_Achr9P07890_001 240 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqTRKGRQAGGYDKEEKAARAYDLAALKYWG 297
                            57*******************5544.235555*************************98 PP
2AP246.96.9e-15340391155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr9P07890_001 340 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 391
                            57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-15240307IPR016177DNA-binding domain
CDDcd000181.74E-18240307No hitNo description
PfamPF008472.8E-9240297IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-12241306IPR001471AP2/ERF domain
PROSITE profilePS5103217.214241305IPR001471AP2/ERF domain
SMARTSM003808.8E-23241311IPR001471AP2/ERF domain
PRINTSPR003673.0E-6242253IPR001471AP2/ERF domain
CDDcd000181.22E-24340401No hitNo description
PfamPF008478.6E-10340391IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18340401IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-18341400IPR001471AP2/ERF domain
SMARTSM003801.5E-33341405IPR001471AP2/ERF domain
PROSITE profilePS5103219.045341399IPR001471AP2/ERF domain
PRINTSPR003673.0E-6381401IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MNNWLGFSLS PQELPPSQSH QTHPSSGIIS NDEVSADCYG LSTDSSSTAP LGIPTLRPDG  60
SFGILEAIHR PGYHSQGSSS ELSMLVGASS NQNTMDNEQP KLEDFLGGHS FARHDQKLPS  120
IAGNYDNPGG YMFSHGCNNG GLMSSNAGCS SSSIGLSMIK TWLRNQPAPP SQVEGNGTSG  180
DGCSTMNGGG AVVGNVGGAL TSSQSLSLEG SGVSAALDAQ SGALETVPRK SIDTFGQRTS  240
IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQAGGYDK EEKAARAYDL AALKYWGTST  300
TTNFPISNYE KELEEMKHMT RQEYVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  360
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKAILE SSTLPIGGAA  420
KRLKEISEHT EASVDGRMAD VGSITSHLTD TISSYASHHH GWPTMGFQQS QPLAVHYPYG  480
HQPRGWYCKQ EQDAVIAAAH GLQDLQQLNL GNSTHNFFQP SVIHNLVNLE SSSMDHGTGG  540
GFVMPVGTTM VGDQNNPGSS SSYAESEGKQ MGYENILSTG DPYAGRSIYY LSQQSGGGSG  600
ASANGGNNVT VCHGAPLFTV WNDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416651.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLM0TYE80.0M0TYE8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P07890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-126AP2 family protein