PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P07000_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 1257aa    MW: 139117 Da    PI: 9.8022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P07000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-1769116148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+WT eEd++lv++++ +G g W+  ar  g++Rt+k+c++rw++yl
  GSMUA_Achr9P07000_001  69 KGPWTMEEDLILVNYIAHHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 116
                            79********************************************97 PP

2Myb_DNA-binding47.83.3e-15122165146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T++E++l+ ++++++G++ W++Iar ++ gRt++++k++w++
  GSMUA_Achr9P07000_001 122 RGNITPQEQLLIMELHARWGNR-WSKIARQLP-GRTDNEIKNYWRT 165
                            7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-2262119IPR009057Homeodomain-like
PROSITE profilePS5129415.79264116IPR017930Myb domain
SuperFamilySSF466899.77E-2967163IPR009057Homeodomain-like
SMARTSM007172.8E-1368118IPR001005SANT/Myb domain
PfamPF002494.4E-1569116IPR001005SANT/Myb domain
CDDcd001673.28E-1071116No hitNo description
PROSITE profilePS5129424.301117171IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-22120171IPR009057Homeodomain-like
SMARTSM007171.8E-13121169IPR001005SANT/Myb domain
PfamPF002491.3E-13122165IPR001005SANT/Myb domain
CDDcd001674.72E-10126165No hitNo description
SuperFamilySSF637481.08E-17408517No hitNo description
Gene3DG3DSA:2.30.30.1602.9E-17409500No hitNo description
SMARTSM002930.0049410471IPR000313PWWP domain
PfamPF008553.7E-13410494IPR000313PWWP domain
CDDcd051627.01E-20410494No hitNo description
PROSITE profilePS5081212.746412473IPR000313PWWP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1257 aa     Download sequence    Send to blast
MPAFTTLITC RSLPNHQNKI ILELNHEGTI KRVGHKGSKL LSLPSKRDRY RRNERRRRVD  60
SSQETEVRKG PWTMEEDLIL VNYIAHHGEG VWNNLARSAG LNRTGKSCRL RWLNYLRPDL  120
RRGNITPQEQ LLIMELHARW GNRWSKIARQ LPGRTDNEIK NYWRTRIQKR VKRSDRATPM  180
SRLPPPLTAS TLNSPPSPAT TSGPSRTSED GVRRGHRGRP QQRQDRHHQG GPGADEPAAQ  240
GGQGFDRGPA EEVQGGRVEG GGRGGQEAAR GSRSEDLHRV NPGLNRGCEE FHGIHSIKQE  300
QFTYKWQLEN LKNSIIVKVF LLLLSSSCFP FSFSSWSFPD VCVMLCFWDL LSYHLGIISG  360
VFILWQNKLT RRRVGARVST DTEKRSMVAA PLPETVGGGG GGGGAGRGSF RAGDLVWAKF  420
KIRAWWPGKV LDATLHAGEV KRHGGGRSVL VAPFGDAAVA WFEPSQLKPF EEQFRQMMEQ  480
SSSTSFVYAV KDALVETEKQ LGSEMSCYCS PDSNSEVAQG VGKRSVAKYS PAQFHERLLD  540
AARDVLGTDM LEVVLLRCWA LTLRRVTQCP ADLLEKDYPD DPLHGPASDD TEVESEVGFN  600
RAGRGPGTSE VSQQKKERSI AELIADKGSE IAEPHRSMVK AASFHELSPS SSSDSQEQKK  660
KGEKSKSSEV GNGVLRVQEE KAIFMDKPDP SLSTDKQASK GEKNQSSGVK NDGVVAEQET  720
RSSGRERKRS KYLSPPYTYI SAYHKRPVSF NYEPTESLNR GAEVSQSSFT GSPQNIVNIN  780
QVSKKEAGKT DSASNHDMGS TSGILSVFLS AAMDPLSRKW NQSASVVRDF LEKFRSFVYS  840
DGSDFHSDQK FLDDLGSNGE RSTEAYMNNS SGIDDTDAKK NKRMNLVGDK TPNGHIPTES  900
GKVQKRRKIK HGDGEAGTEI SMATENSSAN GTKLVNYAQE RKMSKGNSVS AKIKFDLHHE  960
LRGNAEGSKS RKRTNKGNDT SDAETRLDTG AGFAGQAEPN KLGRRTKGNG GSKPESASEM  1020
EHKPTSSSEE DRSKKKKEET NYETPAYLLL KFAPGTALPS KGDIISRFSI YGPLDKSDTE  1080
ILQGSHCIRV AFKRGMDAEK ALKNLDGSGS LESAVTKQEL HYFSGNISSQ LRTSTVLKTP  1140
LPYIRKSLER MISKLTEFVE AEKDVGSSNM LRPEITDNLV DEMDGLLKKV DKLLTGPSLV  1200
GSSCYNMTPK FICFLLITSN ALRYELLLEA IVHVTGHISI PRTSMSLLCV CIRNMVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-246617124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15057RRNERRRR
2254261GGRVEGGG
310301036DRSKKKK
410311037RSKKKKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416735.10.0PREDICTED: uncharacterized protein LOC103997294
TrEMBLM0TY590.0M0TY59_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P07000_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.18e-67myb domain protein 21