PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr9P07000_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1257aa MW: 139117 Da PI: 9.8022 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.8e-17 | 69 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv++++ +G g W+ ar g++Rt+k+c++rw++yl GSMUA_Achr9P07000_001 69 KGPWTMEEDLILVNYIAHHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 116 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 122 | 165 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+ ++++++G++ W++Iar ++ gRt++++k++w++ GSMUA_Achr9P07000_001 122 RGNITPQEQLLIMELHARWGNR-WSKIARQLP-GRTDNEIKNYWRT 165 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-22 | 62 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.792 | 64 | 116 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.77E-29 | 67 | 163 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-13 | 68 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-15 | 69 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-10 | 71 | 116 | No hit | No description |
PROSITE profile | PS51294 | 24.301 | 117 | 171 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 120 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 121 | 169 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 122 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.72E-10 | 126 | 165 | No hit | No description |
SuperFamily | SSF63748 | 1.08E-17 | 408 | 517 | No hit | No description |
Gene3D | G3DSA:2.30.30.160 | 2.9E-17 | 409 | 500 | No hit | No description |
SMART | SM00293 | 0.0049 | 410 | 471 | IPR000313 | PWWP domain |
Pfam | PF00855 | 3.7E-13 | 410 | 494 | IPR000313 | PWWP domain |
CDD | cd05162 | 7.01E-20 | 410 | 494 | No hit | No description |
PROSITE profile | PS50812 | 12.746 | 412 | 473 | IPR000313 | PWWP domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1257 aa Download sequence Send to blast |
MPAFTTLITC RSLPNHQNKI ILELNHEGTI KRVGHKGSKL LSLPSKRDRY RRNERRRRVD 60 SSQETEVRKG PWTMEEDLIL VNYIAHHGEG VWNNLARSAG LNRTGKSCRL RWLNYLRPDL 120 RRGNITPQEQ LLIMELHARW GNRWSKIARQ LPGRTDNEIK NYWRTRIQKR VKRSDRATPM 180 SRLPPPLTAS TLNSPPSPAT TSGPSRTSED GVRRGHRGRP QQRQDRHHQG GPGADEPAAQ 240 GGQGFDRGPA EEVQGGRVEG GGRGGQEAAR GSRSEDLHRV NPGLNRGCEE FHGIHSIKQE 300 QFTYKWQLEN LKNSIIVKVF LLLLSSSCFP FSFSSWSFPD VCVMLCFWDL LSYHLGIISG 360 VFILWQNKLT RRRVGARVST DTEKRSMVAA PLPETVGGGG GGGGAGRGSF RAGDLVWAKF 420 KIRAWWPGKV LDATLHAGEV KRHGGGRSVL VAPFGDAAVA WFEPSQLKPF EEQFRQMMEQ 480 SSSTSFVYAV KDALVETEKQ LGSEMSCYCS PDSNSEVAQG VGKRSVAKYS PAQFHERLLD 540 AARDVLGTDM LEVVLLRCWA LTLRRVTQCP ADLLEKDYPD DPLHGPASDD TEVESEVGFN 600 RAGRGPGTSE VSQQKKERSI AELIADKGSE IAEPHRSMVK AASFHELSPS SSSDSQEQKK 660 KGEKSKSSEV GNGVLRVQEE KAIFMDKPDP SLSTDKQASK GEKNQSSGVK NDGVVAEQET 720 RSSGRERKRS KYLSPPYTYI SAYHKRPVSF NYEPTESLNR GAEVSQSSFT GSPQNIVNIN 780 QVSKKEAGKT DSASNHDMGS TSGILSVFLS AAMDPLSRKW NQSASVVRDF LEKFRSFVYS 840 DGSDFHSDQK FLDDLGSNGE RSTEAYMNNS SGIDDTDAKK NKRMNLVGDK TPNGHIPTES 900 GKVQKRRKIK HGDGEAGTEI SMATENSSAN GTKLVNYAQE RKMSKGNSVS AKIKFDLHHE 960 LRGNAEGSKS RKRTNKGNDT SDAETRLDTG AGFAGQAEPN KLGRRTKGNG GSKPESASEM 1020 EHKPTSSSEE DRSKKKKEET NYETPAYLLL KFAPGTALPS KGDIISRFSI YGPLDKSDTE 1080 ILQGSHCIRV AFKRGMDAEK ALKNLDGSGS LESAVTKQEL HYFSGNISSQ LRTSTVLKTP 1140 LPYIRKSLER MISKLTEFVE AEKDVGSSNM LRPEITDNLV DEMDGLLKKV DKLLTGPSLV 1200 GSSCYNMTPK FICFLLITSN ALRYELLLEA IVHVTGHISI PRTSMSLLCV CIRNMVQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 66 | 171 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 50 | 57 | RRNERRRR |
2 | 254 | 261 | GGRVEGGG |
3 | 1030 | 1036 | DRSKKKK |
4 | 1031 | 1037 | RSKKKKE |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416735.1 | 0.0 | PREDICTED: uncharacterized protein LOC103997294 | ||||
TrEMBL | M0TY59 | 0.0 | M0TY59_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P07000_001 | 0.0 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 8e-67 | myb domain protein 21 |