PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P06750_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 295aa MW: 32169.4 Da PI: 7.4044 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 44.7 | 2.6e-14 | 177 | 215 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +sYYrCt ++C+vkk+vers +dp++v++tYeg+H+h+ GSMUA_Achr9P06750_001 177 RKSYYRCTAQKCNVKKRVERSCQDPTTVITTYEGQHTHH 215 57************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-16 | 156 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-17 | 162 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.728 | 165 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-17 | 170 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-9 | 177 | 215 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSGESSEPYR HDFPFHDDLF SVFSQKPDGL QGFDPQTAPP FMSFGDYLHG STTDGSLVVQ 60 GFDAPRSQPC DPVVGGDGGK NAAAGGGDGM TPVTPNFSAS SSSTEAAGDE DWRPCKVDQP 120 KQEVQEEEKH APQDGEGRDK TKKANKPRKK GERQRGPRFA FMTKSEVDHL EDGYRWRKSY 180 YRCTAQKCNV KKRVERSCQD PTTVITTYEG QHTHHSPASL RGGGGGGGHM LSTSPTTNLR 240 RSLLLQQVSR SSSSAGYTNP NTYHAGLPPL LPQLHVPDHG LLQDIVPSFT HGSQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-15 | 161 | 218 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-15 | 161 | 218 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 149 | RDKTKKANKPRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC186746 | 0.0 | AC186746.1 Musa acuminata clone MA4_25J11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416540.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | M0TY34 | 0.0 | M0TY34_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P06750_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 9e-34 | WRKY DNA-binding protein 28 |