PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P06750_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 295aa    MW: 32169.4 Da    PI: 7.4044
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P06750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY44.72.6e-141772152159
                            -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             +sYYrCt ++C+vkk+vers +dp++v++tYeg+H+h+
  GSMUA_Achr9P06750_001 177 RKSYYRCTAQKCNVKKRVERSCQDPTTVITTYEGQHTHH 215
                            57************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-16156217IPR003657WRKY domain
SuperFamilySSF1182903.66E-17162217IPR003657WRKY domain
PROSITE profilePS5081118.728165217IPR003657WRKY domain
SMARTSM007744.8E-17170216IPR003657WRKY domain
PfamPF031063.5E-9177215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSGESSEPYR HDFPFHDDLF SVFSQKPDGL QGFDPQTAPP FMSFGDYLHG STTDGSLVVQ  60
GFDAPRSQPC DPVVGGDGGK NAAAGGGDGM TPVTPNFSAS SSSTEAAGDE DWRPCKVDQP  120
KQEVQEEEKH APQDGEGRDK TKKANKPRKK GERQRGPRFA FMTKSEVDHL EDGYRWRKSY  180
YRCTAQKCNV KKRVERSCQD PTTVITTYEG QHTHHSPASL RGGGGGGGHM LSTSPTTNLR  240
RSLLLQQVSR SSSSAGYTNP NTYHAGLPPL LPQLHVPDHG LLQDIVPSFT HGSQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-15161218878Probable WRKY transcription factor 4
2lex_A2e-15161218878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137149RDKTKKANKPRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1867460.0AC186746.1 Musa acuminata clone MA4_25J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416540.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLM0TY340.0M0TY34_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P06750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.19e-34WRKY DNA-binding protein 28