PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P06660_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 387aa MW: 41865.2 Da PI: 8.7729

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P06660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.5e-18	75	135	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ GSMUA_Achr9P06660_001 75 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKN 135 89***************99***********************************995 PP
2	Wus_type_Homeobox	112.4	2.4e-36	74	137	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++kq GSMUA_Achr9P06660_001 74 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKNKQ 137 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-12	70	141	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.56	71	136	IPR001356	Homeobox domain
SMART	SM00389	1.7E-9	73	140	IPR001356	Homeobox domain
CDD	cd00086	4.80E-9	74	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-7	74	139	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-15	75	134	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNAH HQWQHDINAY QQRTPYASGD GGLFGSFFSV GSNMYNTTFR 60 SIAVPGCEER SPEPKPRWNP KPEQIRILEA IFNSGMVNPP RDEIRRIRAQ LQEYGQVGDA 120 NVFYWFQNRK SRSKNKQRHL QGARLQPRPS VPASPSPPPV TTKPAATAAA TSSSSSSSEQ 180 TTGSDKTLLP VASMGSPLTT TMRSTLPATS MNPMYLNGPG PAEFGIESFL PEGPHGYCFT 240 GTDLMGIVGD ATKVKMQLHH LYGIGASAAG SAATATGVST ASATVTCVNA SARALGDGGA 300 ARSTVFTNEV AFEVAAGPLN IKETFGHEAV LLDHSGHPVL TDEWGVTIHP LQHGACYYLV 360 SFHFPSLQFN MLSRKCHEML MFGHLQV

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNAH HQWQHDINAY QQRTPYASGD GGLFGSFFSV GSNMYNTTFR  60
SIAVPGCEER SPEPKPRWNP KPEQIRILEA IFNSGMVNPP RDEIRRIRAQ LQEYGQVGDA  120
NVFYWFQNRK SRSKNKQRHL QGARLQPRPS VPASPSPPPV TTKPAATAAA TSSSSSSSEQ  180
TTGSDKTLLP VASMGSPLTT TMRSTLPATS MNPMYLNGPG PAEFGIESFL PEGPHGYCFT  240
GTDLMGIVGD ATKVKMQLHH LYGIGASAAG SAATATGVST ASATVTCVNA SARALGDGGA  300
ARSTVFTNEV AFEVAAGPLN IKETFGHEAV LLDHSGHPVL TDEWGVTIHP LQHGACYYLV  360
SFHFPSLQFN MLSRKCHEML MFGHLQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018673620.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	M0TY25	0.0	M0TY25_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P06660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-54	homeobox-3