PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P06610_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HB-other

Protein Properties

Length: 1773aa MW: 199362 Da PI: 5.7944

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P06610_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.2	4.3e-16	3	52	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++qle+Le+ ++ + yps++ r+eL+ k+gL++rq ++WF+ rR k++k GSMUA_Achr9P06610_001 3 TPYQLEILENTYAVEAYPSEALRAELSVKTGLSDRQLQMWFCHRRLKDRK 52 89**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.528	1	53	IPR001356	Homeobox domain
SMART	SM00389	8.2E-11	1	57	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-14	2	54	IPR009057	Homeodomain-like
CDD	cd00086	6.31E-13	2	54	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.2E-14	3	54	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-13	3	52	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.767	535	594	IPR018501	DDT domain
SMART	SM00571	1.4E-20	535	594	IPR018501	DDT domain
Pfam	PF02791	2.5E-17	537	591	IPR018501	DDT domain
Pfam	PF05066	8.3E-16	717	785	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.9E-9	930	973	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-13	1104	1176	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1773 aa Download sequence Send to blast
MKTPYQLEIL ENTYAVEAYP SEALRAELSV KTGLSDRQLQ MWFCHRRLKD RKVQSARKRR 60 REAESLPPTP PPPVLPPQSD MLSSESGGLG LSSSPYAVGR RYYDALLPPP PTHLAHLAVM 120 ECQILASVEA QLGEPLRPDG PVLGVEFDPL PPGAFGVPIE TPTQEQQPVW PHGGHMFERH 180 DTKMASSFLS SMEHRLPSSS KGKRKTAVGA SHTVRLQMGP RALHEYQFIP KQPSVRSEAL 240 DRVSLSHYLE SSSDAPNTKM TSLPSGGRYL HVNDHEGPSY TFQGQNLSAD LLTQEGRQQA 300 FPSVSVEYDN SLDGNSFPDP ATDAQFGMGE VPGLENPYLS SYRRLDRKRK SDEVRIAKEV 360 EAHEKRIRKE IEKQDILRRK REEQMQREME RHERERRKEE ERVMRERQRE EEKFQREQRR 420 ENERREKFLL KESCRAEKLR QKEELRREKE AARLKAARER ATARRIAKEY MELIEDERLE 480 LLELAAANKG FSSIFALDSE TLQQLDSFRS KLTAFPPSSV RLKRPFEIQP WADSDEKIAN 540 LLMVWKFLIT FADVLGLWPF TLDEFVQSLH DYDSRLLGEV HVALLKSIIK DVEDVARTPA 600 YTLGASQSCT VNPGGGHPQI VEGAHAWGFN IHSWQRHLNY LTWPEILRQF ALSAGFGPQL 660 KKRNVERVHF RNENEGNDGE NIISTLRNGL AAENAVAILK VRGFTHRRKS RHRLTPGTVK 720 FAAFHVLSLE GSKGLTILEV ADKIQKSGLR DLTTSKTPEA SISAALSRDT KLFERTAPST 780 YCVRSPYRKD PADADAVISA AREKIQVFHS AISDSEEAEK DAEDVDDAER DEDSEGDAAA 840 EPEVDDGGSD AKVDKHDHLT SELEHSRTLN LLGKEKGGAI VNAGKGPQMP SENTKTLSTS 900 GVPQLPDINL NCREAGNGDM EDTEIDESNF GEPWVQGLSE GDYSELTVEE RLNALVALVG 960 VATEGNLIRA ILEERLEAAN ALKKQMWAEA QLDKRRFREE YSNRLQGTAF GGYKVEATLT 1020 YGAGEESQTP LDGVDKGNNG NLDAISNEQF LETNQVNLGN MSIGQQFTSP DVLPVQHYGY 1080 AIEKSRSQLK SFIGYKAEQL HVYRSLPLGQ DRRQNRYWQF TTSSSPNDPG SGRIFFESKD 1140 CHWLLIDSEE AFDALLATLD TRGIRESHLH SMLQRIETTF KEAIRRNKKA FKSSLLVRDH 1200 VKTVLTRTAS SPDCSVELDS PSSTLCCLAS DGLENSASFR IELGQNEFEK SAALRRYQDL 1260 FRWMWKECYN PCILYAMKYG KKRCSELLHT CDSCFQSFLA EEKHCPSCHK TFKTFHNPDA 1320 IFAEHVALCE QKRKSDPGWK LQVSDSSLPI GIRLLKAQLS MIEVSIPAEA LQAFWTEGYR 1380 KSWGVKLHSS SSAEELFQIL TLLEGAIRRD FLSSNFETTT ELLSYNTPGV YTDNGASHSG 1440 SVPVLPWMPD TSAAVALRLL DLDSSISYML HRKLESHKEK GDCTKLQSRY VVVHKMQEVE 1500 PMDTAGYDDH EGRWRDSVSG CRGRGRGSDG KRGRGRGQGG RRLRGSGSSS RSELRTENID 1560 SFEKATRKYT RRGRGRGRGC GRGRGRGRRS SRPRQSSENW VDTVDKGSLL GSFIIANTST 1620 DQARIEVSPE SAGEEWAIGE TGTAYVEDDA SAGSESEENG QASGEDYDDQ VIYSARDDHA 1680 ASKPVGLIDD ESEGDRERDE EGDEDDVDYD GNDLDDHMDE DEIGDTAERN TDEDDGASSF 1740 STEYIQVIRP YSNCWVVCIT CVYKIQASKC RCW

Sequence ? help Back to Top

Protein Sequence Length: 1773 aa Download sequence Send to blast

MKTPYQLEIL ENTYAVEAYP SEALRAELSV KTGLSDRQLQ MWFCHRRLKD RKVQSARKRR  60
REAESLPPTP PPPVLPPQSD MLSSESGGLG LSSSPYAVGR RYYDALLPPP PTHLAHLAVM  120
ECQILASVEA QLGEPLRPDG PVLGVEFDPL PPGAFGVPIE TPTQEQQPVW PHGGHMFERH  180
DTKMASSFLS SMEHRLPSSS KGKRKTAVGA SHTVRLQMGP RALHEYQFIP KQPSVRSEAL  240
DRVSLSHYLE SSSDAPNTKM TSLPSGGRYL HVNDHEGPSY TFQGQNLSAD LLTQEGRQQA  300
FPSVSVEYDN SLDGNSFPDP ATDAQFGMGE VPGLENPYLS SYRRLDRKRK SDEVRIAKEV  360
EAHEKRIRKE IEKQDILRRK REEQMQREME RHERERRKEE ERVMRERQRE EEKFQREQRR  420
ENERREKFLL KESCRAEKLR QKEELRREKE AARLKAARER ATARRIAKEY MELIEDERLE  480
LLELAAANKG FSSIFALDSE TLQQLDSFRS KLTAFPPSSV RLKRPFEIQP WADSDEKIAN  540
LLMVWKFLIT FADVLGLWPF TLDEFVQSLH DYDSRLLGEV HVALLKSIIK DVEDVARTPA  600
YTLGASQSCT VNPGGGHPQI VEGAHAWGFN IHSWQRHLNY LTWPEILRQF ALSAGFGPQL  660
KKRNVERVHF RNENEGNDGE NIISTLRNGL AAENAVAILK VRGFTHRRKS RHRLTPGTVK  720
FAAFHVLSLE GSKGLTILEV ADKIQKSGLR DLTTSKTPEA SISAALSRDT KLFERTAPST  780
YCVRSPYRKD PADADAVISA AREKIQVFHS AISDSEEAEK DAEDVDDAER DEDSEGDAAA  840
EPEVDDGGSD AKVDKHDHLT SELEHSRTLN LLGKEKGGAI VNAGKGPQMP SENTKTLSTS  900
GVPQLPDINL NCREAGNGDM EDTEIDESNF GEPWVQGLSE GDYSELTVEE RLNALVALVG  960
VATEGNLIRA ILEERLEAAN ALKKQMWAEA QLDKRRFREE YSNRLQGTAF GGYKVEATLT  1020
YGAGEESQTP LDGVDKGNNG NLDAISNEQF LETNQVNLGN MSIGQQFTSP DVLPVQHYGY  1080
AIEKSRSQLK SFIGYKAEQL HVYRSLPLGQ DRRQNRYWQF TTSSSPNDPG SGRIFFESKD  1140
CHWLLIDSEE AFDALLATLD TRGIRESHLH SMLQRIETTF KEAIRRNKKA FKSSLLVRDH  1200
VKTVLTRTAS SPDCSVELDS PSSTLCCLAS DGLENSASFR IELGQNEFEK SAALRRYQDL  1260
FRWMWKECYN PCILYAMKYG KKRCSELLHT CDSCFQSFLA EEKHCPSCHK TFKTFHNPDA  1320
IFAEHVALCE QKRKSDPGWK LQVSDSSLPI GIRLLKAQLS MIEVSIPAEA LQAFWTEGYR  1380
KSWGVKLHSS SSAEELFQIL TLLEGAIRRD FLSSNFETTT ELLSYNTPGV YTDNGASHSG  1440
SVPVLPWMPD TSAAVALRLL DLDSSISYML HRKLESHKEK GDCTKLQSRY VVVHKMQEVE  1500
PMDTAGYDDH EGRWRDSVSG CRGRGRGSDG KRGRGRGQGG RRLRGSGSSS RSELRTENID  1560
SFEKATRKYT RRGRGRGRGC GRGRGRGRRS SRPRQSSENW VDTVDKGSLL GSFIIANTST  1620
DQARIEVSPE SAGEEWAIGE TGTAYVEDDA SAGSESEENG QASGEDYDDQ VIYSARDDHA  1680
ASKPVGLIDD ESEGDRERDE EGDEDDVDYD GNDLDDHMDE DEIGDTAERN TDEDDGASSF  1740
STEYIQVIRP YSNCWVVCIT CVYKIQASKC RCW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	60	RKRRR
2	1577	1586	RGCGRGRGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416526.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	M0TY20	0.0	M0TY20_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P06610_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator