PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P06410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 270aa    MW: 30247 Da    PI: 9.7801
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P06410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.45.2e-1524117186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr..tsessstcp 80 
                            +W++ e+ +L++a  ++  +l+rg+l++++W+ev++++      + r   r+ +qCk++++ l+k+yk +k +   +   + + s++p
  GSMUA_Achr9P06410_001  24 CWSEGETSELVDAWGDRYLELNRGNLRQKHWQEVADAVnsrrgaSGRRPPRTDVQCKNRIDTLKKKYKIEKSRIVTGggLAAAASQWP 111
                            7*************************************998876666668999***************99998765534789999*** PP

               trihelix  81 yfdqle 86 
                            +f++l+
  GSMUA_Achr9P06410_001 112 FFSRLD 117
                            ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2622118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMMEGRETAP SRPPNPALPY REDCWSEGET SELVDAWGDR YLELNRGNLR QKHWQEVADA  60
VNSRRGASGR RPPRTDVQCK NRIDTLKKKY KIEKSRIVTG GGLAAAASQW PFFSRLDTLI  120
GSSAAAAAPL AKKPSRSPPL ARPAATAFSV DDSIFRRAAA AAAAAEDDDD DEDADMGSPS  180
GSSSRSARGW RRAREKEGDG IRELARAIER FAEMYERVEG AKQRQMMELE KKRMEFSKEL  240
EFQRMQIFVD SQVQLAKIKR AKRSDADGYM
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416507.11e-155PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG87e-48ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM0TY000.0M0TY00_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P06410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-37sequence-specific DNA binding transcription factors