PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P05930_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 20232.1 Da PI: 10.4702 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 101 | 145 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++lG g+W+ I+r + ++Rt+ q+ s+ qky GSMUA_Achr9P05930_001 101 AWTEEEHKLFLAGLERLGRGDWRGISRNFVTTRTPTQVASHAQKY 145 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.981 | 94 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.81E-18 | 95 | 150 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-18 | 97 | 149 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.4E-11 | 98 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-11 | 98 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-9 | 101 | 146 | No hit | No description |
Pfam | PF00249 | 3.7E-12 | 101 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MERKCCEGVE SEHNSRNSIS PRRMVGGGLR LFGMQLEMAA SPMKKCFSTD CLTCPAAASS 60 SPSPSSSSSL VSIDETAEKT SNGYLSDGLV VRTQERKKGV AWTEEEHKLF LAGLERLGRG 120 DWRGISRNFV TTRTPTQVAS HAQKYFLRQS GLNKKKRRSS LFDVVNRSPS AAFTIIRLLL 180 IQT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 157 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416462.1 | 1e-108 | PREDICTED: uncharacterized protein LOC103997055 | ||||
TrEMBL | M0TXV2 | 1e-132 | M0TXV2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P05930_001 | 1e-133 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 4e-44 | MYB_related family protein |