PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P05780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24576 Da    PI: 8.453
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P05780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.34.6e-24958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien ++rq tf kRr g++KKA ELSvLCda+ ++++fss+gkly y 
  GSMUA_Achr9P05780_001  9 KRIENPIQRQSTFYKRRDGLFKKARELSVLCDADLLLLLFSSSGKLYQYH 58
                           79**********************************************96 PP
2K-box258.2e-10891701899
                  K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                            + e++ ++k  ++L+re+R ++ ++ ++ sl +L  Le++Le+++ k+R   ++ + +qi++l  + ++ q+e   L  k++
  GSMUA_Achr9P05780_001  89 NAEMEMVEKLCDTLERELRFMKVDEGQQYSLPDLGLLEHNLETAIGKVRVEMDRKIGAQIHKLETMVRDRQQERYGLCDKIA 170
                            6789999999***************************************************************999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.282161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-27276IPR002100Transcription factor, MADS-box
CDDcd002658.34E-31273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.61285175IPR002487Transcription factor, K-box
PfamPF014865.9E-1088169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGRTEIKR IENPIQRQST FYKRRDGLFK KARELSVLCD ADLLLLLFSS SGKLYQYHSP  60
SVASAKELIE RYEVAAQTQI RGDRRLERNA EMEMVEKLCD TLERELRFMK VDEGQQYSLP  120
DLGLLEHNLE TAIGKVRVEM DRKIGAQIHK LETMVRDRQQ ERYGLCDKIA RVQTLRGMEA  180
DGSASSTPGL DLRLGTYSSV DTWLGSSPWF SAHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-14162162MEF2 CHIMERA
6byy_B2e-14162162MEF2 CHIMERA
6byy_C2e-14162162MEF2 CHIMERA
6byy_D2e-14162162MEF2 CHIMERA
6bz1_A2e-14162162MEF2 CHIMERA
6bz1_B2e-14162162MEF2 CHIMERA
6bz1_C2e-14162162MEF2 CHIMERA
6bz1_D2e-14162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416444.11e-140PREDICTED: MADS-box transcription factor 32-like
SwissprotQ8S1515e-84MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLM0TXT71e-156M0TXT7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P05780_0011e-157(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119233439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-16MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]