PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P04510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 266aa    MW: 30268.1 Da    PI: 9.893
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P04510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21.1e-1323106286
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            W+++ + aLi+a  +++ rl+rg+l++++W+ev++++     + ++  ++  qCk++++ l+k+yk +k+  +       s++++f++
  GSMUA_Achr9P04510_001  23 WSEDATGALIDAWGDRHLRLSRGSLRQKDWKEVADAVnerreAVGKPPKTDAQCKNRIDTLKKKYKIEKAKPGP------SEWSFFSR 104
                            *************************************885433334467888****************999986......57999999 PP

               trihelix  85 le 86 
                            l+
  GSMUA_Achr9P04510_001 105 LD 106
                            86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.7E-2421106No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDSGRRHLHH HHHAGGGGRE DIWSEDATGA LIDAWGDRHL RLSRGSLRQK DWKEVADAVN  60
ERREAVGKPP KTDAQCKNRI DTLKKKYKIE KAKPGPSEWS FFSRLDLLIG DAATEPYHRP  120
TPSLRLQHSH PLPKRHPSLV STVKHRNPNG AADEDDDDEQ ERKLNGMFAG ALAGKRRRDW  180
GVYGCGMGDG DGGHGPFSEL ARAIMKFADV YERVENSKQR QMMELELKRM EFAKDLEFQR  240
MQMIIEAQIE VEKMKRRKNT SGSGKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8786611e-176FM878661.1 Musa acuminata subsp. burmannicoides var. calcutta 4 mRNA containing microsatellite, clone MAC4-72F16-F.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416299.11e-149PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG82e-34ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM0TXG00.0M0TXG0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P04510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-49sequence-specific DNA binding transcription factors