PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P04400_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 1702aa MW: 186247 Da PI: 6.8763 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9.2e-09 | 799 | 840 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+++E +++ + +++G++ +++I++ ++ ++t +c+++++k GSMUA_Achr9P04400_001 799 PWSEDEKDIFMEMLARYGKD-FTKISSSLN-HKTTADCIEFYYK 840 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 27.6 | 6.8e-09 | 1011 | 1050 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++a + ++ +++I+++m +R+++qck ++ GSMUA_Achr9P04400_001 1011 WTDEEKSIFIQALGTYDKD-FTKISSCMR-TRSREQCKIFFS 1050 *****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.54E-13 | 784 | 846 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 792 | 843 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.014 | 795 | 846 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-9 | 796 | 844 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-7 | 799 | 840 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.846 | 1006 | 1057 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-8 | 1007 | 1055 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.35E-10 | 1008 | 1057 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.8E-5 | 1010 | 1051 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.08E-7 | 1011 | 1049 | No hit | No description |
Pfam | PF00249 | 5.5E-7 | 1011 | 1049 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1702 aa Download sequence Send to blast |
MPPEPLPWDR KEYAFKDQRK HERGDALGGG GGGGSSSASR WKDPYHGGPR DLLRASPRRP 60 FSSHCRQGGG YHQVHPDDSV GHGCTPSRSD RFWSEDDGYR PASVRHGGCY RTSSSGSSRE 120 NRGSFRRSPC WDSGDFSRQH RHDPHATALR SVAAPISSTS QIPLKEQNDK TGGVDDGLGT 180 GHIFDHRDHS LGSIPWKKWS RPGSLGFTKT SRSESEEACL EGVLPSGKEN PIQSLVTLTL 240 PPDEVAPRKK PRLGWGQGLA KYEKQKVEGS VETSVGGSKG SLSDDSQKVT SISGCLSPTT 300 PCSATCSSSP GTEDKLCSRT VNDYDGMNQN SDLPGSAFLS FCEEISNNLD HLEANPIRSL 360 DSLLTDLFQS VDAFSGDSTF SRDSALNKLL KLKGSISNGL EKIECEIDLL EKELKSLNCD 420 TKTDSYQSSV KLANDSALEA CIQPLAGLSD ESNPSKDQKV ETIEVAFVEE HVPCGSLVKH 480 DTVIKDIYII NPETLSSKFH LAIEKLSESP LLIKDEKLKV TELQQIVDSD CGERIMVASE 540 DGNRNCGDGD CSSVHVSFDE ATQGKDSNLI TSIIDSNMNA AKCASKVFGT AFSTNPLLSD 600 IWGLVNFTSC RKNDLKIKEK LATRKCQLRF KERVLILKFK ALHHLWKEDL RLLSIKKVRT 660 KSSKRFELMS RSSQNGSQKQ RSSTRSRFAS PVAGWVFSLD YVVAIMIRTD FFLTTVVLFL 720 FFKKRRKLIG NLTLVPTTEI VNFTSKLLSD AQIKLCRNNL KMPTLLLDDK ERKYNKFVTQ 780 NGLIKDPPSF EKERAMINPW SEDEKDIFME MLARYGKDFT KISSSLNHKT TADCIEFYYK 840 NHKSESFKEV KKWLDLRKQQ QQCLPANTYL VASGKKWNHE MNASSLDMLG AASAVVAHDH 900 CSSKSEKYAG SAVYGTCNDM KVSYGSSYLE GENSVDVSGQ ERDFVAADVL AGICGALSSE 960 TMSSCVTSFI HPAERINRIT MDQLLTPEVT QNLDEEEACS DEGCELGSAD WTDEEKSIFI 1020 QALGTYDKDF TKISSCMRTR SREQCKIFFS KARKCLGLDV IRQGTVLGGT PLSDANGGRS 1080 DTDDACVAEM DSAICSTQSC SKVDVDVSQS VANTSYEGIA HAAGNPFHAE TDRSNEQDGD 1140 VFPGPNLVAD SADRETIVGG NTNVVSPNVS ILTIGKTEPV VEACLEVEST KSTSSTVCNV 1200 DTTGGSPAEG LKVVVKTEAS LSSKVGLSKK NTTNINLTAN GKGLLCCGPD SNASAAALFS 1260 GTVANVCHLA FDPRYQQQIQ LDLQQRKPKQ PQAILLKQEN VHHVPLNSLL PDPSSICFGG 1320 TLNVSSETTL NFEQGNKWHQ NLLKRGIYQQ YMPRKLSVNQ VDRNMHILRG YPLQALSQDV 1380 TREVDLTAGE KPSLLEAECK TNVVPQSNQF FMSDKHWNEN NLLPSNSGIL RSSRSENQSE 1440 VEIRTCIKNA SSEIEEHRTG DVKLFGKILS HTSPLPQSSS SSHESNPRTS PELDGSSTTN 1500 CASIRRDNHR LVPNIGSGQV GLEALPVRTY GFWDGKRRQT GFSSLPETAS MLAKYQGSLT 1560 GVSLYSAKDG MPSGNGVLTD YQQSYVQHLS SNGKRVENIS ELQKRNGGME MVSGFQQQGR 1620 VAPLGAKNMM GGGILVGGGG GVSDPVAALK MHYAARASTL NNNIEAWRAD MGDRTKVCNT 1680 ISYQCFEVGS IQYGTNVPSD TS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 4e-15 | 762 | 848 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 4e-15 | 762 | 848 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 722 | 726 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009416283.1 | 0.0 | PREDICTED: uncharacterized protein LOC103996938 isoform X1 | ||||
TrEMBL | M0TXE9 | 0.0 | M0TXE9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P04400_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-103 | MYB family protein |