PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P03720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 322aa    MW: 35111.5 Da    PI: 8.0538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P03720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-17651147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  GSMUA_Achr9P03720_001  6 KGPWSPEEDVMLSRLVDKFGARNWSLIARGVP-GRSGKSCRLRWCNQ 51
                           79******************************.***********985 PP
2Myb_DNA-binding54.72.3e-1758102147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r ++T+eEd ++  a++ +G++ W++Iar ++ gRt++ +k++w++ 
  GSMUA_Achr9P03720_001  58 RRPFTEEEDRIITSAHAIHGNK-WASIARLLQ-GRTDNAIKNHWNST 102
                            679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.524156IPR017930Myb domain
SuperFamilySSF466896.83E-31399IPR009057Homeodomain-like
SMARTSM007173.3E-15554IPR001005SANT/Myb domain
PfamPF002497.0E-17651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-25759IPR009057Homeodomain-like
CDDcd001678.58E-15850No hitNo description
PROSITE profilePS5129422.65157107IPR017930Myb domain
SMARTSM007176.2E-1657105IPR001005SANT/Myb domain
PfamPF002497.5E-1558102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2260105IPR009057Homeodomain-like
CDDcd001672.29E-1260103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEDRVKGPWS PEEDVMLSRL VDKFGARNWS LIARGVPGRS GKSCRLRWCN QLDPYVKRRP  60
FTEEEDRIIT SAHAIHGNKW ASIARLLQGR TDNAIKNHWN STLRRTCIEA KQYKTISCDS  120
SGDAAGIERA KGSSDESLSF SNVNSFKSME VKDPSLRENA SENSGEVVVI RDEPLVPESR  180
NPPNLFRPVA KGSAFSPYNS TPRRLSGPEA SGRGLLGGPL YEAFKPGGGI CKFLNNVSCE  240
PQVPQRCGHR CCIIQDGSHS SSSSLGPEFI EFVEPPPIPS HELASVGSEI GSIAWLKSGL  300
NSSCTSIYAT PPGQVDSCGV HI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-4031074108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416214.10.0PREDICTED: myb-related protein 315-like
TrEMBLM0TX810.0M0TX81_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P03720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-76myb domain protein 109