PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P03020_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 411aa MW: 45411.9 Da PI: 5.3687

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P03020_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	28	4.5e-09	197	216	2	21
--SS-EEEEEEE--TT-SS- CS WRKY 2 dDgynWrKYGqKevkgsefp 21 +D ++WrKYGqK++kgs++p GSMUA_Achr9P03020_001 197 SDLWAWRKYGQKPIKGSPYP 216 699***************99 PP
2	WRKY	52.8	7.7e-17	242	282	20	59
S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 + r+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ GSMUA_Achr9P03020_001 242 YIRGYYRCSSSkGCSARKQVERSRTDPNILVITYTSEHNHP 282 77*****998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-28	190	284	IPR003657	WRKY domain
PROSITE profile	PS50811	25.568	191	284	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-6	194	217	IPR003657	WRKY domain
SMART	SM00774	5.5E-29	196	283	IPR003657	WRKY domain
Pfam	PF03106	1.5E-4	198	216	IPR003657	WRKY domain
SuperFamily	SSF118290	1.01E-13	240	284	IPR003657	WRKY domain
Pfam	PF03106	1.1E-13	241	282	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MYDYLWKRME NDHGDLGDIV RAGGRIGPQN MEIEPAVERE LPTEAVAFHT RTESPTDGFG 60 HPLVDLRDSL LGRNTGTEFL DGAEAMLAPS KMAMESSSDP GGGGRFILAR KVLSGKQEVE 120 ISCSIFSSKP SLSSPGEMLQ LSGGSTAGPM DHGDDVQIWS PRSSQEIKRR KSQAKKVVCV 180 PAPVAASSRP SSEAVPSDLW AWRKYGQKPI KGSPYPSIRL LNSERGKDLV FILSITIVIN 240 IYIRGYYRCS SSKGCSARKQ VERSRTDPNI LVITYTSEHN HPWPTQRNAL AGTARSHPSK 300 NGPKCSSDQG VLKSRTAPKE DPMERLVKHE VAEMEKAIEP AAEDDEFHQS HTRMLPEEDQ 360 PDDFFEDLSE LETDPLSLIF SSEGFMESKP DEERANKALD PFSTFDWAGS S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MYDYLWKRME NDHGDLGDIV RAGGRIGPQN MEIEPAVERE LPTEAVAFHT RTESPTDGFG  60
HPLVDLRDSL LGRNTGTEFL DGAEAMLAPS KMAMESSSDP GGGGRFILAR KVLSGKQEVE  120
ISCSIFSSKP SLSSPGEMLQ LSGGSTAGPM DHGDDVQIWS PRSSQEIKRR KSQAKKVVCV  180
PAPVAASSRP SSEAVPSDLW AWRKYGQKPI KGSPYPSIRL LNSERGKDLV FILSITIVIN  240
IYIRGYYRCS SSKGCSARKQ VERSRTDPNI LVITYTSEHN HPWPTQRNAL AGTARSHPSK  300
NGPKCSSDQG VLKSRTAPKE DPMERLVKHE VAEMEKAIEP AAEDDEFHQS HTRMLPEEDQ  360
PDDFFEDLSE LETDPLSLIF SSEGFMESKP DEERANKALD PFSTFDWAGS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-18	172	285	3	80	Disease resistance protein RRS1
5w3x_D	1e-18	172	285	3	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416100.1	0.0	PREDICTED: probable WRKY transcription factor 35 isoform X2
Swissprot	Q9SA80	2e-61	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	M0TX11	0.0	M0TX11_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P03020_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-43	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]