PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P01880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 401aa    MW: 45002.6 Da    PI: 6.1621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P01880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.92.2e-28621991128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 
                            lp+G+rF+P+d el+ e+L+ k+  ++    + ++e+i+++d    i++++P++Lp  +k++ ++++fF++ +++y tg+rk+r+   
  GSMUA_Achr9P01880_001  62 LPAGVRFDPSDVELL-EHLAGKIGLENsklhMLIDEFIPTLDedegICYTHPENLP-GAKKDGSSIHFFHRISNAYGTGQRKRRKinq 147
                            799************.99****988875555222334544434455**********.556778899******************8455 PP

                    NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                 +  +W++tgk+k+vl+      g kk++v+y  ++r +++ k++Wvmh+y+l
  GSMUA_Achr9P01880_001 148 hafsEECVRWHKTGKTKRVLE-----NGWKKIMVLYrsSKRGSRPDKANWVMHQYHL 199
                            555434677**********99.....79********5445777888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3247218IPR003441NAC domain
PROSITE profilePS5100525.35862218IPR003441NAC domain
PfamPF023652.9E-1363199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MLKLVLCVTW LITGRGIARK VKNANCFDND QIKDLGVGAN RECPNCKHLI DNSDVTSVWP  60
GLPAGVRFDP SDVELLEHLA GKIGLENSKL HMLIDEFIPT LDEDEGICYT HPENLPGAKK  120
DGSSIHFFHR ISNAYGTGQR KRRKINQHAF SEECVRWHKT GKTKRVLENG WKKIMVLYRS  180
SKRGSRPDKA NWVMHQYHLG TEEDEKKGEL VVSKIFYQHS TSRLDKIEAD PFNEESNVFT  240
VKIGPRTPNT NTPQPPRQKK GSPHEVNGHS LPLLLGQEEH CPNSGVPLLP LSISPWTGEV  300
ETPARWAGES QAVDEPDPIN LQESLLCHEV LDSFPHFEDS SLHVNGTNLN CGRNVPASAI  360
DSTACEFSDL DNILIDTPPD FQLSDLQFGS QESSMSWLDR Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416662.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLM0TWP50.0M0TWP5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P01880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.19e-80NAC domain containing protein 44