PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P01640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 381aa MW: 43150.3 Da PI: 6.1039 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.4 | 1.3e-34 | 18 | 108 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+ye+++d+++++++sws + nsfvv+++ +fa ++Lp+yFkh+nf+SF+RQLn+YgF+k+++e+ weF+++ F kg GSMUA_Achr9P01640_001 18 FLLKTYEMVDDASTNDVVSWSPSMNSFVVWNPPDFAAHLLPTYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFANEDFIKG 96 9********************999*****************************************999.........*********** PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll++i r+k GSMUA_Achr9P01640_001 97 QKHLLKNIYRRK 108 **********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-37 | 12 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.3E-34 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.7E-60 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-19 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.4E-30 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-19 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.7E-19 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
METEVGEHGG SAGGPAPFLL KTYEMVDDAS TNDVVSWSPS MNSFVVWNPP DFAAHLLPTY 60 FKHNNFSSFI RQLNTYGFRK IDSERWEFAN EDFIKGQKHL LKNIYRRKPI HSHSRPPGGG 120 LADSERIALE EEIDRLKREK ASLQMAVQKF EQLHSGTKIQ LGDVERRVAD MEKRQLKMVA 180 FLQRVMQNPR LMENLVKMVS SSSIDFSVIH KKRRLPLGAD HCQENSENSL CDDHCSTSKF 240 EFGHALNQDF CDKLRLELCS AYLDSNVVMA STQSSNEDTC SSRPKQINLN QEEANLSEMN 300 NIVTTKENEL NTLISAGARA APLQEAPRTS NETPAVPPVR VNDMFWEQFL TERPGSSDNE 360 EASSGLRAYP GGEQNDERHR K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-22 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 9 | 107 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415941.1 | 0.0 | PREDICTED: heat stress transcription factor A-5 | ||||
Swissprot | Q6K6S5 | 1e-112 | HSFA5_ORYSJ; Heat stress transcription factor A-5 | ||||
TrEMBL | M0TWM1 | 0.0 | M0TWM1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P01640_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9000 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 2e-89 | HSF family protein |
Publications ? help Back to Top | |||
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