PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P00910_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 282aa    MW: 31708.4 Da    PI: 6.0859
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P00910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.3e-36241152102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+e++++isw+e+g++fvv+ + efa+++Lpk+Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g
  GSMUA_Achr9P00910_001  24 FLTKTYQLVDDPEMDDVISWNEDGSTFVVWRPAEFARDLLPKHFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDYFRRG 102
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll++i+r+k 
  GSMUA_Achr9P00910_001 103 EKRLLREIHRRKA 115
                            **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5720113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.97E-3521113IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.7E-5145185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAPAAEPAEE RAADGQQRAL PTPFLTKTYQ LVDDPEMDDV ISWNEDGSTF VVWRPAEFAR  60
DLLPKHFKHN NFSSFVRQLN TYGFRKIVPD RWEFANDYFR RGEKRLLREI HRRKAVTVAP  120
QPAPAAAASR MTALVSRARS PTNSGEEQLG EENERLRKEN ERLAREVAQM KSLCGQIASL  180
ISRHPEDATS EEVPPSPPGA SPRLFGVSIG VKRPRSEDGD GPPPMLKPGP TESAGLDPNE  240
VYPERRPQHP RVIDCPEPTR RACNVPDWAD RGGEERDDEA RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-242411329129Heat shock factor protein 1
5d5v_B3e-242411329129Heat shock factor protein 1
5d5v_D3e-242411329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986293e-95FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415832.21e-177PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW42e-76HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLM0TWE80.0M0TWE8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P00910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-67heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]