PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr9P00580_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 24640.1 Da PI: 8.2108 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.3 | 3.8e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ + +l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++ GSMUA_Achr9P00580_001 4 SCNGCRVLRKGCSDGCTIRPCLqwiksPEAQANATVFLAKFYGRAGLANLIDAGPEHLRPAIFQSLLYEACGRIVNPIYGSVGLLWSG 91 6*************************************************************************************** PP DUF260 84 qqqleqlkaelallk 98 ++ql+q+++e++l + GSMUA_Achr9P00580_001 92 SWQLCQAAVEAVLKG 106 *********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.691 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKS PEAQANATVF LAKFYGRAGL ANLIDAGPEH 60 LRPAIFQSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPVT QISSDSAAAA 120 VPAFKAYDIR HVAKKSDAAA VPGGLHSVAA RSRTRRENGS AFSGETAERS HVSQGEPDAE 180 PADVGLDLRL GLEPESRNGG GVAGGEPVVV PQMERRKAWA ADACRVELGL SLVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954764 | 8e-43 | EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728404 | 8e-43 | KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415791.1 | 1e-155 | PREDICTED: LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 3e-79 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | M0TWB5 | 1e-169 | M0TWB5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P00580_001 | 1e-170 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-81 | LOB domain-containing protein 41 |