PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P33850_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 149aa MW: 16124.5 Da PI: 10.6994 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56 | 5.4e-18 | 38 | 72 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+tt+TplWR gp g+k+LCnaCG++yrk ++ GSMUA_Achr8P33850_001 38 CADCRTTTTPLWRAGPCGPKSLCNACGIRYRKSRR 72 ********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.9E-18 | 32 | 83 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.14 | 32 | 88 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-13 | 34 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.5E-16 | 36 | 82 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.28E-13 | 37 | 89 | No hit | No description |
Pfam | PF00320 | 1.0E-15 | 38 | 72 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 38 | 63 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEFRPGLTDP SHGVREMSSG SSDPSSSTSS GDSQIKRCAD CRTTTTPLWR AGPCGPKSLC 60 NACGIRYRKS RRAVPVSKEA GTGMRKTKRE IDGGSGGERF EVSFKLRMLG PGLCKPRSMV 120 QKQRRRSMLG EVEEAAVLLM ALSSGFLHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009414459.1 | 1e-104 | PREDICTED: GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 2e-28 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | M0TVY7 | 1e-103 | M0TVY7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P33850_001 | 1e-104 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-30 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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