PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P33310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 283aa    MW: 31562.8 Da    PI: 8.0727
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P33310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52111431128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                            lppGfrFhP+deelv++yL+kkv+g +         +    vi +vd++k+ePwdLp+++  + k wyf+s rd+kyatg+r+nrat 
  GSMUA_Achr8P33310_001  11 LPPGFRFHPRDEELVCDYLEKKVRGGSdgagsS---HggypVIVDVDLNKCEPWDLPEMACVGGKVWYFYSLRDRKYATGQRTNRATM 95 
                            79***********************99665541...155558***************7666789************************ PP

                    NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +gyWkatgkd++v++ +g+ vg++ktLvfy+grapkg+ktdWvmhe+r+
  GSMUA_Achr8P33310_001  96 TGYWKATGKDRQVKR-RGAMVGMRKTLVFYHGRAPKGKKTDWVMHEFRM 143
                            **************9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-604166IPR003441NAC domain
PROSITE profilePS5100555.40811166IPR003441NAC domain
PfamPF023651.3E-2612143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSFLSMTEAR LPPGFRFHPR DEELVCDYLE KKVRGGSDGA GSSHGGYPVI VDVDLNKCEP  60
WDLPEMACVG GKVWYFYSLR DRKYATGQRT NRATMTGYWK ATGKDRQVKR RGAMVGMRKT  120
LVFYHGRAPK GKKTDWVMHE FRMESSDPPS FPPLREDWVL CRVLHKSRYG ATTSMTTSCH  180
DHANASSLPP LMEPFISFDP ARLESNAQAP CFSDLPPSSV PLQDAAAPPT SSIGGFPDSG  240
ACDRDDKVIK TLLNHFLPPS LPQGSSEGFF FADNGLSHMW NTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47716711169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009414522.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0TVT30.0M0TVT3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P33310_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-90NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]