PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P28910_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 840aa    MW: 93519.5 Da    PI: 6.9913
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P28910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK94.19.7e-30584635152
                 RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            aek+is+++l++yFs+++kdAA+++gvc+T+LKr+CRqyGI RWP+Rkik++
  GSMUA_Achr8P28910_001 584 AEKNISFSVLQRYFSGSLKDAANSIGVCPTTLKRACRQYGILRWPSRKIKKV 635
                            589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.824574655IPR003035RWP-RK domain
PfamPF020426.0E-23587635IPR003035RWP-RK domain
SuperFamilySSF542777.2E-19711802No hitNo description
PROSITE profilePS5174520.08719801IPR000270PB1 domain
SMARTSM006662.1E-14719801IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2407.6E-18720801No hitNo description
PfamPF005647.6E-14720800IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MRLQLFGTSM DMGPGTDGFA TADCGWSGSP IPCDPFALSE LVNFDGYIES CSPATIVDQI  60
FTMSFSIVQQ TPGVWASPAQ DIIAGDTSVA AGTYYSCGEK MASQKANLLL ELPSHRPGMD  120
IASRKIGCFD FDDISNQGNS TVPRPFGGVS LPDRMLRALS LLKESSCGGA ILAQVWMPIR  180
QGNHYVLSTS EQPFLCDQNL AGYREVSRHF TFSTKDAPGL FLELPGRVFI SGRPEWTSNV  240
IYYNRFEYLR VDYAVIHDVR GSLAVPIFDP DGCSCHAVLE LVTTIEKPNF DTEMESVSKA  300
LQAVNLRSIK AQAHQQSFTK SQISIFSEIH DVSRVICHAH MLPLAITWIP IWCDDGAIYE  360
AKFEKDDIGV MKPTSRRTIL CIQKLACYVN DRQMKDFLHA CAEHHLEKGQ GVAGKALRSN  420
YPFFSPDVRV YDIREYPLAH HARRFDLRAA VAFRLKSTYT GNDDYIVEFF LPINCRGIEE  480
QQLLLSYLSS TMRRIHGSLR TVLDAEIGGS EIMRVGNHNE ASLGSSSTAF SMKSSQLMDG  540
NSETTAEMHF GVQNMESNEQ SAGAHHEQLK SISMKHMEKK RSTAEKNISF SVLQRYFSGS  600
LKDAANSIGV CPTTLKRACR QYGILRWPSR KIKKVNRSLQ KIQKVIRSVQ GPKGQDLMPA  660
SSSHDSETNH SIGKVEQDYF TSDGGLLPYA NMQDSSNGRA LNHPSFEKSK ALISQIGPLI  720
TVKATYNGDT VRFKFLLSMG SHHLFEEIER RFKLLAGTFQ LEHMDNDEEW VLLVNDSDLQ  780
ECINVPNNIG SKTVKLQVRD VPCYIILVVG NQHRNLILRD ATVNPSDCGQ VLVGCYVIVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4845890.0AY484589.1 Musa acuminata clone MuH9, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415041.10.0PREDICTED: protein NLP2-like isoform X1
SwissprotQ0JC270.0NLP2_ORYSJ; Protein NLP2
TrEMBLM0TUJ40.0M0TUJ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P28910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-162Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]