PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P28910_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Nin-like | ||||||||
Protein Properties | Length: 840aa MW: 93519.5 Da PI: 6.9913 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 94.1 | 9.7e-30 | 584 | 635 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+is+++l++yFs+++kdAA+++gvc+T+LKr+CRqyGI RWP+Rkik++ GSMUA_Achr8P28910_001 584 AEKNISFSVLQRYFSGSLKDAANSIGVCPTTLKRACRQYGILRWPSRKIKKV 635 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.824 | 574 | 655 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.0E-23 | 587 | 635 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.2E-19 | 711 | 802 | No hit | No description |
PROSITE profile | PS51745 | 20.08 | 719 | 801 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.1E-14 | 719 | 801 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 7.6E-18 | 720 | 801 | No hit | No description |
Pfam | PF00564 | 7.6E-14 | 720 | 800 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MRLQLFGTSM DMGPGTDGFA TADCGWSGSP IPCDPFALSE LVNFDGYIES CSPATIVDQI 60 FTMSFSIVQQ TPGVWASPAQ DIIAGDTSVA AGTYYSCGEK MASQKANLLL ELPSHRPGMD 120 IASRKIGCFD FDDISNQGNS TVPRPFGGVS LPDRMLRALS LLKESSCGGA ILAQVWMPIR 180 QGNHYVLSTS EQPFLCDQNL AGYREVSRHF TFSTKDAPGL FLELPGRVFI SGRPEWTSNV 240 IYYNRFEYLR VDYAVIHDVR GSLAVPIFDP DGCSCHAVLE LVTTIEKPNF DTEMESVSKA 300 LQAVNLRSIK AQAHQQSFTK SQISIFSEIH DVSRVICHAH MLPLAITWIP IWCDDGAIYE 360 AKFEKDDIGV MKPTSRRTIL CIQKLACYVN DRQMKDFLHA CAEHHLEKGQ GVAGKALRSN 420 YPFFSPDVRV YDIREYPLAH HARRFDLRAA VAFRLKSTYT GNDDYIVEFF LPINCRGIEE 480 QQLLLSYLSS TMRRIHGSLR TVLDAEIGGS EIMRVGNHNE ASLGSSSTAF SMKSSQLMDG 540 NSETTAEMHF GVQNMESNEQ SAGAHHEQLK SISMKHMEKK RSTAEKNISF SVLQRYFSGS 600 LKDAANSIGV CPTTLKRACR QYGILRWPSR KIKKVNRSLQ KIQKVIRSVQ GPKGQDLMPA 660 SSSHDSETNH SIGKVEQDYF TSDGGLLPYA NMQDSSNGRA LNHPSFEKSK ALISQIGPLI 720 TVKATYNGDT VRFKFLLSMG SHHLFEEIER RFKLLAGTFQ LEHMDNDEEW VLLVNDSDLQ 780 ECINVPNNIG SKTVKLQVRD VPCYIILVVG NQHRNLILRD ATVNPSDCGQ VLVGCYVIVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY484589 | 0.0 | AY484589.1 Musa acuminata clone MuH9, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415041.1 | 0.0 | PREDICTED: protein NLP2-like isoform X1 | ||||
Swissprot | Q0JC27 | 0.0 | NLP2_ORYSJ; Protein NLP2 | ||||
TrEMBL | M0TUJ4 | 0.0 | M0TUJ4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P28910_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 1e-162 | Nin-like family protein |
Publications ? help Back to Top | |||
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