PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr8P28330_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 327aa MW: 36823.3 Da PI: 5.9635 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 98.5 | 6.6e-31 | 1 | 85 | 9 | 102 |
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 +++d++++ ++sws++g sfvv+++ +f +++Lp+yFkh+nf+SFvRQLn+YgFkk++ e+ weF+++ F kg+++ll+k GSMUA_Achr8P28330_001 1 MVDDASTDAIVSWSSTGASFVVWNPIDFVTSLLPTYFKHNNFSSFVRQLNTYGFKKIDPER---------WEFANDDFVKGQNHLLKK 79 899*******************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k GSMUA_Achr8P28330_001 80 IHRRKP 85 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 5.3E-28 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.3E-31 | 1 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.2E-27 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 2.9E-46 | 1 | 83 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-9 | 32 | 44 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 33 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-9 | 45 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MVDDASTDAI VSWSSTGASF VVWNPIDFVT SLLPTYFKHN NFSSFVRQLN TYGFKKIDPE 60 RWEFANDDFV KGQNHLLKKI HRRKPTHSHS HPPGGGLADA ERVALEGTIE RLNQEKAGLE 120 DIIQKFMQQK SGTEIQIDDL ERRLADMEQR HLRILAFVQR ALQKPELMAN LMKMAVTSSM 180 DISVIHKKRR LPPDLDYSNQ ASVNNLRADR NTSTNPEKGY ILDQDFCEKL KLELSSGIPD 240 DSLITVVTHS SNEDNDWAAH ATDLKTSNTA RENDLTIPVV TIQSMVAQST DAKVVSSQEV 300 PPSNEASAVH IPANDVFWQQ FLTERPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-19 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-19 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-19 | 1 | 83 | 36 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018685269.1 | 0.0 | PREDICTED: heat stress transcription factor A-5-like | ||||
Swissprot | Q6K6S5 | 1e-90 | HSFA5_ORYSJ; Heat stress transcription factor A-5 | ||||
TrEMBL | M0TUD6 | 0.0 | M0TUD6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P28330_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9000 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 2e-77 | HSF family protein |
Publications ? help Back to Top | |||
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