PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P28330_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 327aa    MW: 36823.3 Da    PI: 5.9635
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P28330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.56.6e-311859102
                            HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
           HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                            +++d++++ ++sws++g sfvv+++ +f +++Lp+yFkh+nf+SFvRQLn+YgFkk++ e+         weF+++ F kg+++ll+k
  GSMUA_Achr8P28330_001   1 MVDDASTDAIVSWSSTGASFVVWNPIDFVTSLLPTYFKHNNFSSFVRQLNTYGFKKIDPER---------WEFANDDFVKGQNHLLKK 79 
                            899*******************************************************999.........****************** PP

                            XXXXXX CS
           HSF_DNA-bind  97 ikrkks 102
                            i+r+k 
  GSMUA_Achr8P28330_001  80 IHRRKP 85 
                            ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.3E-28183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-31183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004152.9E-46183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVDDASTDAI VSWSSTGASF VVWNPIDFVT SLLPTYFKHN NFSSFVRQLN TYGFKKIDPE  60
RWEFANDDFV KGQNHLLKKI HRRKPTHSHS HPPGGGLADA ERVALEGTIE RLNQEKAGLE  120
DIIQKFMQQK SGTEIQIDDL ERRLADMEQR HLRILAFVQR ALQKPELMAN LMKMAVTSSM  180
DISVIHKKRR LPPDLDYSNQ ASVNNLRADR NTSTNPEKGY ILDQDFCEKL KLELSSGIPD  240
DSLITVVTHS SNEDNDWAAH ATDLKTSNTA RENDLTIPVV TIQSMVAQST DAKVVSSQEV  300
PPSNEASAVH IPANDVFWQQ FLTERPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1918336129Heat shock factor protein 1
5d5v_B2e-1918336129Heat shock factor protein 1
5d5v_D2e-1918336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685269.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ6K6S51e-90HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLM0TUD60.0M0TUD6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P28330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.12e-77HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]