PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P27820_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 363aa    MW: 40859.4 Da    PI: 8.7039
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P27820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.7e-32181092102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F+ k+ye++ed++ + li+w +++nsfvv+d+++f+  +Lp++Fkh+nf+SF+RQLn+YgF+kv+ ++         weF+h+sF kg
  GSMUA_Achr8P27820_001  18 FVAKTYEMVEDPSSDFLIRWGKKNNSFVVVDPNDFSCFLLPSFFKHRNFSSFIRQLNTYGFRKVDPDR---------WEFAHESFLKG 96 
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll  + r+ +
  GSMUA_Achr8P27820_001  97 QTHLLPLVTRRGK 109
                            ********99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-3610101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.63E-3214107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5114107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2718107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEEKSRACTG SQEQVAPFVA KTYEMVEDPS SDFLIRWGKK NNSFVVVDPN DFSCFLLPSF  60
FKHRNFSSFI RQLNTYGFRK VDPDRWEFAH ESFLKGQTHL LPLVTRRGKS EGGLHGSSST  120
DGVEGEEERV LLQELHRLRQ EQKALDEEVT VMSRRLQATE RRPQQLMSFL VKAAQDPNLL  180
QRLVQSKQQQ QQASMKKKKM RLSAALPLPK DHGILLPFGE VSAMEPTTFD PLGISSFDYG  240
GLSVRSQPEC NLRGTSSGAA SSLAFPDQAG ARERNAKSSS PLHDEMIRCY TRKQSHCLTE  300
GVEKSLGRRG WGKLPLLLAC DMATCHRHVG SPACEQLWCV SLSSQVVHPQ WYGADRRAWV  360
TGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-191410725129Heat shock factor protein 1
5d5v_B2e-191410725129Heat shock factor protein 1
5d5v_D2e-191410725129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415170.10.0PREDICTED: heat stress transcription factor C-1b-like
RefseqXP_018685867.10.0PREDICTED: heat stress transcription factor C-1b-like
SwissprotQ6VBA42e-68HFC1A_ORYSJ; Heat stress transcription factor C-1a
SwissprotQ9LV522e-68HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLM0TU850.0M0TU85_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P27820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]