PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr8P27820_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 363aa MW: 40859.4 Da PI: 8.7039 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103.6 | 1.7e-32 | 18 | 109 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F+ k+ye++ed++ + li+w +++nsfvv+d+++f+ +Lp++Fkh+nf+SF+RQLn+YgF+kv+ ++ weF+h+sF kg GSMUA_Achr8P27820_001 18 FVAKTYEMVEDPSSDFLIRWGKKNNSFVVVDPNDFSCFLLPSFFKHRNFSSFIRQLNTYGFRKVDPDR---------WEFAHESFLKG 96 9****************************************************************999.........*********** PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +++ll + r+ + GSMUA_Achr8P27820_001 97 QTHLLPLVTRRGK 109 ********99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.0E-36 | 10 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.63E-32 | 14 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.4E-51 | 14 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-17 | 18 | 41 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-27 | 18 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-17 | 56 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 57 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-17 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MEEKSRACTG SQEQVAPFVA KTYEMVEDPS SDFLIRWGKK NNSFVVVDPN DFSCFLLPSF 60 FKHRNFSSFI RQLNTYGFRK VDPDRWEFAH ESFLKGQTHL LPLVTRRGKS EGGLHGSSST 120 DGVEGEEERV LLQELHRLRQ EQKALDEEVT VMSRRLQATE RRPQQLMSFL VKAAQDPNLL 180 QRLVQSKQQQ QQASMKKKKM RLSAALPLPK DHGILLPFGE VSAMEPTTFD PLGISSFDYG 240 GLSVRSQPEC NLRGTSSGAA SSLAFPDQAG ARERNAKSSS PLHDEMIRCY TRKQSHCLTE 300 GVEKSLGRRG WGKLPLLLAC DMATCHRHVG SPACEQLWCV SLSSQVVHPQ WYGADRRAWV 360 TGC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-19 | 14 | 107 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-19 | 14 | 107 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-19 | 14 | 107 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009415170.1 | 0.0 | PREDICTED: heat stress transcription factor C-1b-like | ||||
Refseq | XP_018685867.1 | 0.0 | PREDICTED: heat stress transcription factor C-1b-like | ||||
Swissprot | Q6VBA4 | 2e-68 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
Swissprot | Q9LV52 | 2e-68 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | M0TU85 | 0.0 | M0TU85_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr8P27820_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24520.1 | 4e-60 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
---|---|---|---|
|